View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_20 (Length: 440)
Name: NF16504_low_20
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 260 - 422
Target Start/End: Complemental strand, 4111662 - 4111500
Alignment:
| Q |
260 |
tgtcactgtgtccgaacctagttgtttgatatgaagatgaagattgtgccttccaagtttgcctcccgagcttacctttgtaagctcgtatgtactagat |
359 |
Q |
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| T |
4111662 |
tgtcactgtgtccgaacctagttgtttgatatgaagatgaagattgtgccttccaagtttgcctcccgagcttacctctgtaagctcgtatgtactagat |
4111563 |
T |
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| Q |
360 |
gattcctgcaaacaattaccaaagaatcacaaaccaatcatgtcaatgttcttctacatatcc |
422 |
Q |
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| T |
4111562 |
gattcctgcaaacaattaacaaagaatcacaaaccaatcatgtcaatgttcttctacatatcc |
4111500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 4111812 - 4111665
Alignment:
| Q |
16 |
aactcttttcattgatatatacattgtaaggacttctttagttcttcgatacttatttgaattgagaagctcttatgattcgttagaaactaatccaaaa |
115 |
Q |
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| T |
4111812 |
aactcttttcattgatatatacattgtaaggacttctttagttcttcgatacttatttgaattgagaagctcttatgattcgttagaaactaatccaaaa |
4111713 |
T |
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| Q |
116 |
ttggcctaaatccactcttgtattcgtgtgcaaaagaatgaaaaactg |
163 |
Q |
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| T |
4111712 |
ttggcctaaatccactcttgtattggtgtgcaaaagaaagaaaaactg |
4111665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 260 - 428
Target Start/End: Original strand, 4768322 - 4768484
Alignment:
| Q |
260 |
tgtcactgtgtccgaacctagttgtttgatatgaagatgaagattgtgccttccaagtttgcctcccgagcttacctttgtaagctcgtatgtactagat |
359 |
Q |
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| T |
4768322 |
tgtcactgtgtccggacctagttgtttgatatga------agattgtgtcttccaagtttgcctcctgtgcttacctctgtaagctcgtatgtactagat |
4768415 |
T |
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| Q |
360 |
gattcctgcaaacaattaccaaagaatcacaaaccaatcatgtcaatgttcttctacatatccaccctt |
428 |
Q |
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| T |
4768416 |
gattcctgcaaacaattaccaaagaatcacaaaccaatcatgtcaagtttcttctacatatccaccctt |
4768484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 4383186 - 4383303
Alignment:
| Q |
305 |
gtgccttccaagtttgcctcccgagcttacctttgtaagctcgtatgtactagatgattcctgcaaacaattaccaaagaatcacaaaccaatcatgtca |
404 |
Q |
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| T |
4383186 |
gtgccttccaagtttgcctcccgagcttacctctgtaagctcgtatgtactagatgattcctgcaaacaattaacaaagaatcacaaaccaatcatgtca |
4383285 |
T |
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| Q |
405 |
atgttcttctacatatcc |
422 |
Q |
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| T |
4383286 |
atgttcttctacatatcc |
4383303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 4768062 - 4768152
Alignment:
| Q |
63 |
gatacttatttgaattgagaagctcttatgattcgttagaaactaatccaaaattggcctaaatccactcttgtattcgtgtgcaaaagaa |
153 |
Q |
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| T |
4768062 |
gatacttatttgaattgagaagctcttgtgagttgttagaaactaatcgaaaattggcctaaatccactcttgtattgttgtgcaaaagaa |
4768152 |
T |
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