View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16504_low_22 (Length: 427)

Name: NF16504_low_22
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16504_low_22
NF16504_low_22
[»] chr1 (11 HSPs)
chr1 (16-427)||(32363580-32363991)
chr1 (41-303)||(7797443-7797704)
chr1 (41-303)||(8055353-8055614)
chr1 (41-303)||(33699433-33699694)
chr1 (41-303)||(46019397-46019658)
chr1 (41-303)||(49573033-49573294)
chr1 (41-303)||(46076911-46077172)
chr1 (84-200)||(43467357-43467473)
chr1 (217-303)||(19552963-19553049)
chr1 (235-309)||(30901682-30901756)
chr1 (251-303)||(28705100-28705152)
[»] chr8 (2 HSPs)
chr8 (41-303)||(24784728-24784989)
chr8 (41-303)||(35196003-35196264)
[»] chr7 (2 HSPs)
chr7 (41-303)||(6204982-6205243)
chr7 (231-303)||(6792990-6793062)
[»] chr3 (1 HSPs)
chr3 (77-311)||(34543543-34543773)
[»] chr4 (1 HSPs)
chr4 (41-303)||(54908512-54908772)
[»] scaffold0012 (1 HSPs)
scaffold0012 (52-303)||(109302-109552)
[»] chr5 (2 HSPs)
chr5 (215-307)||(41550376-41550468)
chr5 (42-131)||(41550548-41550637)
[»] chr6 (1 HSPs)
chr6 (223-303)||(6260957-6261037)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Original strand, 32363580 - 32363991
Alignment:
Q  16 atgtcaaacattggaacagagaggccaactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttga 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32363580 atgtcaaacattggaacagagagaccaactctaggtggaagacaactttcatgtctactcgttggcatttatggaaatggtggaacaaaacaatctttga 32363679  T
Q  116 ggaaaagttccaaagatcggataatcatacgagtatcatccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  32363680 ggaaaagttccaaagatcggataatcatacgagtatcatccaaaagtttacccgtaatatcgatgattgtactcgtaattattttgtagatggattatgg 32363779  T
Q  216 gcacaccgaaataatttatattggttggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatggaaatcattccggc 315  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  32363780 gcacaccgaaataatttatattgattggaaatatcctcaagagagatgggtcaaactcaactgtaatgaggcatgcaaagaaaatggaaatcatttcggc 32363879  T
Q  316 tgtggcaacttgcnnnnnnnngttacgaatgttggatatttaaagtttgtaacttaagaaatcaaaatgaatgaaaaatattgtatgagttagagtgctc 415  Q
    |||||||||||||        ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32363880 tgtggcaacttgcaaaaaaaagttacaaatgttggatatttaaagtttgtaacttaagaaatcaaaatgaatgaaaaatattgtatgagttagagtgctc 32363979  T
Q  416 gacacttgttac 427  Q
    ||||||||||||    
T  32363980 gacacttgttac 32363991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 41 - 303
Target Start/End: Original strand, 7797443 - 7797704
Alignment:
Q  41 caactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataat 140  Q
    |||||||| |||||||||||||||||||||||||   ||| || | ||||||||| ||||||| ||| |||| |||||||| ||||| ||| | || |||    
T  7797443 caactctaagtggaagacaactttcatgtctacttgctggtatatttggaaatggcggaacaagacagtcttcgaggaaaatttccagagaccagagaat 7797542  T
Q  141 catacgagtatcatccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggt 240  Q
    |  || ||||||||||||||||||||| || |||| || |||||||| | |||| |||||  | ||||||  | | ||||| |||| ||||||||||||     
T  7797543 cccacaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcatttt-caaatggatcttcgacacactgaaacaatttatattggc 7797641  T
Q  241 tggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  7797642 tggaaatatcctcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 7797704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 8055614 - 8055353
Alignment:
Q  41 caactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataat 140  Q
    |||||||| |||||||||||||||||||||||||   ||| || | ||||||||| ||||||| ||| |||| |||||||| ||||| ||| | || |||    
T  8055614 caactctaagtggaagacaactttcatgtctacttgctggtatatttggaaatggcggaacaagacagtcttcgaggaaaatttccagagaccagagaat 8055515  T
Q  141 catacgagtatcatccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggt 240  Q
    |  || ||||||||||||||||||||| || |||| || |||||||| | |||| |||||  | ||||||  | | ||||| |||| ||||||||||||     
T  8055514 cccacaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcatttt-caaatggatcttcgtcacactgaaacaatttatattggc 8055416  T
Q  241 tggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  8055415 tggaaatatcctcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 8055353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 33699694 - 33699433
Alignment:
Q  41 caactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataat 140  Q
    |||||||| |||||||||||||||||||||||||   ||| || | ||||||||| ||||||| ||| |||| |||||||| ||||| ||| | || |||    
T  33699694 caactctaagtggaagacaactttcatgtctacttgctggtatatttggaaatggcggaacaagacagtcttcgaggaaaatttccagagaccagagaat 33699595  T
Q  141 catacgagtatcatccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggt 240  Q
    |  || ||||||||||||||||||||| || |||| || |||||||| | |||| |||||  | ||||||  | | ||||| |||| ||||||||||||     
T  33699594 cccacaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcatttt-caaatggatcttcgtcacactgaaacaatttatattggc 33699496  T
Q  241 tggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  33699495 tggaaatatcctcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 33699433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 46019658 - 46019397
Alignment:
Q  41 caactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataat 140  Q
    |||||||| |||||||||||||||||||||||||   ||| || | ||||||||| ||||||| ||| |||| |||||||| ||||| ||| | |  |||    
T  46019658 caactctaagtggaagacaactttcatgtctacttgctggtatatttggaaatggcggaacaagacagtcttcgaggaaaatttccagagaccagcgaat 46019559  T
Q  141 catacgagtatcatccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggt 240  Q
    |  || ||||||||||||||||||||| || |||| || |||||||| | |||| |||||  | ||||||  | | ||||| |||| ||||||||||||     
T  46019558 cccacaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcatttt-caaatggatcttcgtcacactgaaacaatttatattggc 46019460  T
Q  241 tggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  46019459 tggaaatatcctcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 46019397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 49573294 - 49573033
Alignment:
Q  41 caactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataat 140  Q
    |||||||| |||||||||||||||||||||||||   ||| || | ||||||||| ||||||| ||| |||| |||||||| ||||| ||| | || |||    
T  49573294 caactctaagtggaagacaactttcatgtctacttgctggtatatttggaaatggcggaacaagacagtcttcgaggaaaatttccagagaccagagaat 49573195  T
Q  141 catacgagtatcatccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggt 240  Q
    |  || ||||||||||||||||||||| || |||| || |||||||| | |||| |||||  | ||||||  | | ||||  |||| ||||||||||||     
T  49573194 cccacaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcatttt-caaatggatcttcgtcacattgaaacaatttatattggc 49573096  T
Q  241 tggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  49573095 tggaaatatcctcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 49573033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 303
Target Start/End: Original strand, 46076911 - 46077172
Alignment:
Q  41 caactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataat 140  Q
    |||||||| ||||||||||||||||||| |||||   ||| || | || |||||| ||||||| ||| |||| |||||||| ||||| ||| | || |||    
T  46076911 caactctaagtggaagacaactttcatgactacttgctggtatatttgaaaatggcggaacaagacagtcttcgaggaaaatttccagagaccagagaat 46077010  T
Q  141 catacgagtatcatccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggt 240  Q
    |  || ||||||||||||||||||||| || |||| || |||||||| |  ||| |||||  | ||||||  | | ||||  |||| |||||||||||      
T  46077011 cccacaagtatcatccaaaagtttactagtgatattgaagattgtacactcaatcatttt-caaatggatcttcgacacattgaaacaatttatattgac 46077109  T
Q  241 tggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || || ||||| ||||||    
T  46077110 tggaaatatcctcaagagggatggatcaaactcaattgtgatggagcttgtaaagagaatgga 46077172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 43467473 - 43467357
Alignment:
Q  84 ttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataatcatacgagtatcatccaaaagtttactcgtaatatcgatgatt 183  Q
    |||||||||||| ||||||  ||| || | |||||||| ||| | | | || | ||||| || ||||||||||||||||||||| ||||||| || ||||    
T  43467473 ttatggaaatggcggaacatgacagtcatcgaggaaaatttctagaaaccgaagaatcacacaagtatcatccaaaagtttactagtaatattgaagatt 43467374  T
Q  184 gtactcgtaattatttt 200  Q
    ||||||||||| |||||    
T  43467373 gtactcgtaatcatttt 43467357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 19553049 - 19552963
Alignment:
Q  217 cacaccgaaataatttatattggttggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||| |||| |  |||||||| ||| |  |||||||| ||||||||||||||| ||| ||||||  |||||||||||||||    
T  19553049 cacaccgaaacaattaaatttggttggtaatgttttcaagaggcatgggtcaaactcaattgtgatggggtgtgcaaagaaaatgga 19552963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 30901682 - 30901756
Alignment:
Q  235 attggttggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatggaaatcat 309  Q
    |||||| ||||  ||||||| |||||||| || ||||| || ||| |||||||||||||||| ||||||||||||    
T  30901682 attggtcggaagcatcctcatgagggatgagttaaactaaattgtgatggggcatgcaaagagaatggaaatcat 30901756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 28705100 - 28705152
Alignment:
Q  251 ctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  28705100 ctcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 28705152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 41 - 303
Target Start/End: Original strand, 24784728 - 24784989
Alignment:
Q  41 caactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataat 140  Q
    |||||||| |||||||||||||||||||||||||   ||| || | ||||||||| ||||||| ||| |||| |||||||| ||||| ||| | || |||    
T  24784728 caactctaagtggaagacaactttcatgtctacttgctggtatatttggaaatggcggaacaagacagtcttcgaggaaaatttccagagaccagagaat 24784827  T
Q  141 catacgagtatcatccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggt 240  Q
    |  || ||||||||||||||||||||| || |||| || |||||||| | |||| |||||  | ||||||  | | ||||| |||| ||||||||||||     
T  24784828 cccacaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcatttt-caaatggatcttcgtcacactgaaacaatttatattggc 24784926  T
Q  241 tggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  24784927 tggaaatatcctcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 24784989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 35196264 - 35196003
Alignment:
Q  41 caactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataat 140  Q
    |||||||| |||||||||||||||||||||||||   ||| || | ||||||||| ||||||| ||| |||| |||||||| ||||| ||| | || |||    
T  35196264 caactctaagtggaagacaactttcatgtctacttgctggtatatttggaaatggcggaacaagacagtcttcgaggaaaatttccagagaccagagaat 35196165  T
Q  141 catacgagtatcatccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggt 240  Q
    |  || ||||||||||||||||||||| || |||| || |||||||| | |||| |||||  | ||||||  | | ||||| |||| ||||||||||||     
T  35196164 cccacaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcatttt-caaatggatcttcgtcacactgaaacaatttatattggc 35196066  T
Q  241 tggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  35196065 tggaaatatcctcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 35196003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 41 - 303
Target Start/End: Original strand, 6204982 - 6205243
Alignment:
Q  41 caactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataat 140  Q
    |||||||| |||||||||||||||||||||||||   ||| || | ||||||||| ||||||| ||| |||| |||||||| ||||| ||| | || |||    
T  6204982 caactctaagtggaagacaactttcatgtctacttgctggtatatttggaaatggcggaacaagacagtcttcgaggaaaatttccagagaccagagaat 6205081  T
Q  141 catacgagtatcatccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggt 240  Q
    |  || ||||||||||||||||||||| || |||| || |||||||| | |||| |||||  | ||||||  | | ||||| |||| ||||||||||||     
T  6205082 cccacaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcatttt-caaatggatcttcgtcacactgaaacaatttatattggc 6205180  T
Q  241 tggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  6205181 tggaaatatcctcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 6205243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 6793062 - 6792990
Alignment:
Q  231 ttatattggttggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  6793062 ttatattggctggaaatatcctcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 6792990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 77 - 311
Target Start/End: Original strand, 34543543 - 34543773
Alignment:
Q  77 ttggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataatcatacgagtatcatccaaaagtttactcgtaatatc 176  Q
    |||| ||||||| || ||| |||| |||| | |||||||| |||| || |||||||  |||||| |||  |||||||  |||||||||| | |||||||     
T  34543543 ttggtatttatgtaagtggcggaataaaatagtctttgagaaaaaatttcaaagataagataattata--agtatcactcaaaagtttattagtaatatt 34543640  T
Q  177 gatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggttggaaatatcctcaagagggatgggtcaaactcaac 276  Q
    || |||| |||||||||| ||||| ||||||||| || |||||||||||| ||||||||||| |||||||| || |||||  |||||||||||||||||     
T  34543641 gaagattttactcgtaatgatttt-tagatggatacttggcacaccgaaacaatttatattgattggaaatgtc-tcaaggaggatgggtcaaactcaat 34543738  T
Q  277 tgtaatggggcatgcaaagaaaatggaaatcattc 311  Q
    ||| ||||||| || |||||||||||| |||||||    
T  34543739 tgtgatggggcgtgtaaagaaaatggagatcattc 34543773  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 54908772 - 54908512
Alignment:
Q  41 caactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataat 140  Q
    ||||||||  |||||||||||||||||| |||||   ||| || | || |||||| | ||||| ||| |||| |||||||| ||||| ||| |||| |||    
T  54908772 caactctaactggaagacaactttcatgactacttgctggtatatttgtaaatggcgaaacaagacagtcttcgaggaaaatttccagaga-cggagaat 54908674  T
Q  141 catacgagtatcatccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggt 240  Q
    |  || ||||||||||||||||||||| || |||| || |||||||| | |||| |||||  | ||||||  | | ||||| |||| ||||||||||||     
T  54908673 cccacaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcattttcaa-atggatcttcgacacactgaaacaatttatattggc 54908575  T
Q  241 tggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  54908574 tggaaatatcctcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 54908512  T

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Target: scaffold0012 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 52 - 303
Target Start/End: Complemental strand, 109552 - 109302
Alignment:
Q  52 ggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaagatcggataatcatacgagtat 151  Q
    ||||||||||||||||| |||||   ||| || | ||||||||| ||||||| ||| |||| |||||||| ||||| ||| || | ||||  || |||||    
T  109552 ggaagacaactttcatgactacttgctggtatatttggaaatggcggaacaagacagtcttcgaggaaaatttccagagaccgaagaatcccacaagtat 109453  T
Q  152 catccaaaagtttactcgtaatatcgatgattgtactcgtaattattttgtagatggattctgggcacaccgaaataatttatattggttggaaatatcc 251  Q
    |||||||||||||||| || |||| || |||||||| | |||| || ||  | ||||||  | | ||||  |||| |||||||||||| |||||||||||    
T  109452 catccaaaagtttactagtgatattgaagattgtacacttaatcatattcaa-atggatcttcgacacattgaaacaatttatattggctggaaatatcc 109354  T
Q  252 tcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    ||||||||||||| |||||||||| ||| |||| || |||||||| ||||||    
T  109353 tcaagagggatggatcaaactcaattgtgatggagcttgcaaagagaatgga 109302  T

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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 307
Target Start/End: Complemental strand, 41550468 - 41550376
Alignment:
Q  215 ggcacaccgaaataatttatattggttggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatggaaatc 307  Q
    ||||||| |||| |||||  |||||||||||  ||||||| ||||||||||| |||||||| ||| |||||||||||||||| ||||||||||    
T  41550468 ggcacactgaaacaattttcattggttggaagcatcctcaggagggatgggttaaactcaattgtgatggggcatgcaaagagaatggaaatc 41550376  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 41550637 - 41550548
Alignment:
Q  42 aactctaggtggaagacaactttcatgtctactcattggcatttatggaaatggtggaacaaaacaatctttgaggaaaagttccaaaga 131  Q
    |||| |||||||||||||||||||||| |||||  || |||||| ||||| ||| | || |||||||| |||||||| || || ||||||    
T  41550637 aactttaggtggaagacaactttcatgactacttgttagcatttgtggaattggcgaaataaaacaatttttgaggataattttcaaaga 41550548  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 6260957 - 6261037
Alignment:
Q  223 gaaataatttatattggttggaaatatcctcaagagggatgggtcaaactcaactgtaatggggcatgcaaagaaaatgga 303  Q
    |||| ||||| ||||||||||||   |||||| ||| ||||| | |||||||| ||| ||||||| |||||||| ||||||    
T  6260957 gaaacaatttttattggttggaagcgtcctcatgagagatggattaaactcaattgtgatggggcgtgcaaagagaatgga 6261037  T

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