View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_23 (Length: 426)
Name: NF16504_low_23
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 1668514 - 1668126
Alignment:
| Q |
1 |
ccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaa |
100 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1668514 |
ccaacatcactcatttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaa |
1668415 |
T |
|
| Q |
101 |
tgagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcctttggttcctcgtgaaaaagatacatcatattttgtttcattacgagg |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
1668414 |
tgagttttggaaaagggagtcaagtgttaggaaatggtgttgttactactcctttggttcctcgtgaaaaagatacatcatattttgttacattactagg |
1668315 |
T |
|
| Q |
201 |
cattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaacatgttggttgattccggaacaccaccaattctattaccacaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| |
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| T |
1668314 |
tattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaacatgttggttgattcaggaacaccaccaattctattgccgcaacaa |
1668215 |
T |
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| Q |
301 |
ttgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattacagatgatccaactttgggtactcaactttgtta |
389 |
Q |
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| T |
1668214 |
ttgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattacagatgatccaagtttgggtactcaactttgtta |
1668126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 1661252 - 1660864
Alignment:
| Q |
1 |
ccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaa |
100 |
Q |
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| T |
1661252 |
ccaacatcactcatttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaa |
1661153 |
T |
|
| Q |
101 |
tgagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcctttggttcctcgtgaaaaagat---acatcatattttgtttcattacg |
197 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||||| || ||||| ||||| |||| |||||| ||||| ||||||||||||||| |||||| |
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| T |
1661152 |
tgagttttggaaaagggagtcaagtgttaggggatggtgtggttactacacctttagttcaacgtgaacaagatatgacatcatattttgttacattact |
1661053 |
T |
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| Q |
198 |
aggcattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaacatgttggttgattccggaacaccaccaattctattaccacaa |
297 |
Q |
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||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| | | ||||||||||| |
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| T |
1661052 |
aggtattagtgtggaagacacatatcttcccatgaatagtactattgaaaagggtaacatgttggttgattcgggaacaccaccgaatatattaccacaa |
1660953 |
T |
|
| Q |
298 |
caattgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattacagatgatccaactttgggtactcaactttg |
386 |
Q |
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| T |
1660952 |
caattgtatgatagagtgtatgttgaagtcaaaaacaatgttccattagaactcattacaaatgatccaagtttgggtcctcaactttg |
1660864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 1680050 - 1679662
Alignment:
| Q |
1 |
ccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| || |
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| T |
1680050 |
ccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgacataacaatttcaagccaaa |
1679951 |
T |
|
| Q |
101 |
tgagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcctttggttcctcgtgaaaaagata---catcatattttgtttcattacg |
197 |
Q |
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||||||||||||||||||||||||||||||| | || || || ||||| ||||| |||| |||||| |||||| ||||||||| |||| |||||| |
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| T |
1679950 |
tgagttttggaaaagggagtgaagtgttaggggaaggcgtggttactacacctttagttcaacgtgaacaagatatgacatcatattatgttacattact |
1679851 |
T |
|
| Q |
198 |
aggcattagtgtggaagacacatattttcccatgaatagtactattggaaaggctaacatgttggttgattccggaacaccaccaattctattaccacaa |
297 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| | | ||||||||||| |
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| T |
1679850 |
aggtattagtgtggaagacacatatcttcccatgaatagtactattgaaaagggtaacatgttggttgattcgggaacaccaccgaatatattaccacaa |
1679751 |
T |
|
| Q |
298 |
caattgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattacagatgatccaactttgggtactcaactttg |
386 |
Q |
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| T |
1679750 |
caattgtatgatagagtgtatgttgaagtcaaaaacaaagttccattggaacccattacggatgatccaagtttgggtcctcaactttg |
1679662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 24546948 - 24546795
Alignment:
| Q |
6 |
gtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaatgagt |
105 |
Q |
| |
|
|||||| ||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||| |||| ||| | | ||| |||||| ||||||| |
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| T |
24546948 |
gtcactcgtttctcaaataggttcttcttttggaggcaagatgttttctcaatgtttggttccattccacactaaccctagtattacaagcccaatgagt |
24546849 |
T |
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| Q |
106 |
tttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcctttggtt |
159 |
Q |
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||||| ||||| |||||||| || || |||||||| || |||| ||||||||| |
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| T |
24546848 |
tttggtaaaggaagtgaagtattggggaatggtgtggtttctacacctttggtt |
24546795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 15798062 - 15797909
Alignment:
| Q |
6 |
gtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaatgagt |
105 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||| ||| || | | |||||||||| ||||||| |
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| T |
15798062 |
gtcacttgtttctcaaataggttcttcccttggaggcaacatgttttctcaatgtttggttccattcaatactaaccctagtatttcaagcccaatgagt |
15797963 |
T |
|
| Q |
106 |
tttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcctttggtt |
159 |
Q |
| |
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||||| ||||| |||||||| || || |||||||| || |||| ||||||||| |
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| T |
15797962 |
tttggtaaaggaagtgaagtattggggaatggtgtggtttctacacctttggtt |
15797909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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