View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_26 (Length: 420)
Name: NF16504_low_26
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 13656966 - 13657351
Alignment:
| Q |
19 |
agcatgcatggttttgcagcaatggtacacgacacaaagtggtggacatgttgaccatggcagtagtaatcagtcatttgtgtatcaatacacaaaattt |
118 |
Q |
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| T |
13656966 |
agcatgcatggtattgcagcaatggtacacgacacaaagtggtggacatgttgaccatggcagtagtaatcactcatttgtgtatcaatacacaaaattt |
13657065 |
T |
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| Q |
119 |
aagttgtgcccccacacgagggtcggcctaagagtaaggttaccaaagcctctgatttagatctaccaacaaaaattatttttcattaaattttacaaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
13657066 |
aagttgtgcccccacacgagggtcggcctaagagtaaggtcaccaaagtctctgatttagatctaccaacagaaattatttttcattagattttacaaac |
13657165 |
T |
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| Q |
219 |
aataattctaac--nnnnnnnnggctaatgtattgaatcttactttaggcatcacttacttttaataaaatttgggttggctctgccccatactcagatg |
316 |
Q |
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|||||||||||| |||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13657166 |
aataattctaacaaaaaaaaaaggctcatatattgaattttactttaagcatcacttacttttaataaaatttgggttggctctgccccatacacagatg |
13657265 |
T |
|
| Q |
317 |
atatttatgacttcaaaataaaaagacggacgagccaaacttaaaattgtatttttagatgtcttctttcttctaagttcatgttc |
402 |
Q |
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| T |
13657266 |
atatttatgactttaaaataaaaagacggacgagccaaacataaaattgtatatctggacatcttctttcttctaacttcatgttc |
13657351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 13715608 - 13715993
Alignment:
| Q |
19 |
agcatgcatggttttgcagcaatggtacacgacacaaagtggtggacatgttgaccatggcagtagtaatcagtcatttgtgtatcaatacacaaaattt |
118 |
Q |
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| T |
13715608 |
agcatgcatggtattgcagcaatggtacacgacacaaagtggtggacatgttgaccatggcagtagtaatcactcatttgtgtatcaatacacaaaattt |
13715707 |
T |
|
| Q |
119 |
aagttgtgcccccacacgagggtcggcctaagagtaaggttaccaaagcctctgatttagatctaccaacaaaaattatttttcattaaattttacaaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
13715708 |
aagttgtgcccccacacgagggtcggcctaagagtaaggtcaccaaagtctctgatttagatctaccaacagaaattatttttcattagattttacaaac |
13715807 |
T |
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| Q |
219 |
aataattctaac--nnnnnnnnggctaatgtattgaatcttactttaggcatcacttacttttaataaaatttgggttggctctgccccatactcagatg |
316 |
Q |
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|||||||||||| |||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13715808 |
aataattctaacaaaaaaaaaaggctcatatattgaattttactttaagcatcacttacttttaataaaatttgggttggctctgccccatacacagatg |
13715907 |
T |
|
| Q |
317 |
atatttatgacttcaaaataaaaagacggacgagccaaacttaaaattgtatttttagatgtcttctttcttctaagttcatgttc |
402 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||| | | || ||||||||||||||| ||||||||| |
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| T |
13715908 |
atatttatgactttaaaataaaaagacggacgagccaaacataaaattgtatatctggacatcttctttcttctaacttcatgttc |
13715993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 26765191 - 26765152
Alignment:
| Q |
174 |
tttagatctaccaacaaaaattatttttcattaaatttta |
213 |
Q |
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|||||| | ||||||||||||||||||||||||||||||| |
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| T |
26765191 |
tttagacccaccaacaaaaattatttttcattaaatttta |
26765152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 18732314 - 18732352
Alignment:
| Q |
183 |
accaacaaaa-attatttttcattaaattttacaaacaa |
220 |
Q |
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| T |
18732314 |
accaacaaaacattatttttcattaaattttacaaacaa |
18732352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 41872461 - 41872428
Alignment:
| Q |
187 |
acaaaaattatttttcattaaattttacaaacaa |
220 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
41872461 |
acaaaaattatttttcattaaattttataaacaa |
41872428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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