View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_28 (Length: 410)
Name: NF16504_low_28
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 34554645 - 34555041
Alignment:
| Q |
1 |
gtgaattttgtaattgttcaaatgcatcctcccatgcactaagctttttctcattttcaagtgcttttccaacaattacaatagcgagaggcaagcctcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34554645 |
gtgaattttgtaattgttcaaatgcatcctcccatgcactaagctttttctcattttcaagtgcttttccaacaattacaatagcaagaggcaagcctcc |
34554744 |
T |
|
| Q |
101 |
acattcctttgcaacttgttttgcaattggataaatatgaggttcatatacaacatcacctgccattgattgaaacagataccaggcttcatccttaagc |
200 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34554745 |
acattcctttgcaacttgttttgctattggataaatacgaggttcatatacaacatcacctgccattgattgaaacagataccaggcttcatccttaagc |
34554844 |
T |
|
| Q |
201 |
aaaatagaaacatgaaaattcacttggcttcccatcttttgacattccttttcatttcgtgatgtgaatattattttgctacattttttattatctcgag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34554845 |
aaaatagaaacatgaaaattcacttggcttcccatcttttgacattccttttcatttcgtgatgtgaatattattttgctacatttttgattatctcgag |
34554944 |
T |
|
| Q |
301 |
atggaagtcccacccaatcaaaattaagctcactccacacatcatcgagcacaactaggactttaatctttccatcatcatcgatttccttcaacct |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34554945 |
atggaagtcccacccaatcaaaattaagctcactccacacatcatcgagcacaactaggactttaatctttccatcatcatcgatttccttcaacct |
34555041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 130151 - 129758
Alignment:
| Q |
1 |
gtgaattttgtaattgttcaaatgcatcctcccatgcactaagctttttctcattttcaagtgcttttccaacaattacaatagcgagaggcaagcctcc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
130151 |
gtgaattttgtaattgttcaaatccatcctcccatgcagtaagctctttctcattttcaagtgctttaccaacaattacaatagcgagaggcaaacctcc |
130052 |
T |
|
| Q |
101 |
acattcctttgcaacttgttttgcaattggataaatatgaggttcatatacaacatcacctgccattgattgaaacagataccaggcttcatccttaagc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||| ||| |
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| T |
130051 |
acattcctttgcaacttgttttgcaattggataaatatgaggttcatatacaacatcacctgtcattgactgaaagagataccaggcttcttccttgagc |
129952 |
T |
|
| Q |
201 |
aaaatagaaacatgaaaattcacttggcttcccatcttttgacattccttttcatttcgtgatgtgaatattattttgctacattttttattatctcgag |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||| ||||||||| |||||||||| |
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| T |
129951 |
aaaatagaaacatgaaaattcacttgacttcccatcttttgacactccttttcaattcgtgatgtgaatacaattttgatacatttttggttatctcgag |
129852 |
T |
|
| Q |
301 |
atggaagtcccacccaatcaaaattaagctcactccacacatcatcgagcacaactaggactttaatctttccatcatcatcgatttccttcaa |
394 |
Q |
| |
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|||||| ||| ||||||||||||||||| || ||||||||||| |||||||||| |||||||||| |||||||||||||||| ||||| ||||| |
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|
| T |
129851 |
atggaattcctacccaatcaaaattaagttcgctccacacatcgtcgagcacaattaggactttagtctttccatcatcatcaatttctttcaa |
129758 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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