View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_3 (Length: 684)
Name: NF16504_low_3
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 73 - 666
Target Start/End: Complemental strand, 45314168 - 45313578
Alignment:
| Q |
73 |
cgaatatggaaggtggtagcagcgaagaagatccattcgtatatcaacttcccaacaagaacttgccaacaccgttcctcacttcaccgtgcaactgcaa |
172 |
Q |
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| T |
45314168 |
cgaatatggaaggtggtagcagcgaagaagatccattcgtatatcaacttcccaaca--------------ccgttactcacttcaccgtgcaactgcaa |
45314083 |
T |
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| Q |
173 |
caacaacaacctccaccaccatcaccagttcatccctcccgtcatcctcttgtccgctccagacacccagcacgtcgataaccaagacgtttttcacact |
272 |
Q |
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| T |
45314082 |
caacaacaacctccaccaccatcaccagttcatccctcccgtcatcctcttgtccgctccagacacccagcacgtcgataaccaagacgtttttcacact |
45313983 |
T |
|
| Q |
273 |
ccgccggatgacccaccgcttccatcttccgtcattgatgttgttgatgcttctcagtgagtttcctgagataaatcctgatgattttagcattttggat |
372 |
Q |
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| T |
45313982 |
ccgccggatgacccaccgcttccatcttccgtcattgatgttgttgatgcttctcagtgagtttcctgagataaatccggatgattttagcattttggat |
45313883 |
T |
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| Q |
373 |
a-----------------atgttgataaggctcctatgaaaaaattgaaatttgggtttgtttctttggagaaaaatgttagaaacccaacaagctgttc |
455 |
Q |
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| T |
45313882 |
aggatagggcaatttctaatgttgataaggctcctatgaaaaaattgaaatttgggtttgtttctttggagaaaaatgtt-gaaacccaacaagctgttc |
45313784 |
T |
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| Q |
456 |
aaaatgatgctgaggatattaacatgattgatgttgagggaaataagtcaagtcaagtcaagaggaggagattatggaaatttctagaatgcgcaagggt |
555 |
Q |
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| T |
45313783 |
aaaatgatgctgaggatattaacatgattgatgttgagggaaataagtcaagtcaag-----aggaggagattatggaaatttctagaatgcgcaagggt |
45313689 |
T |
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| Q |
556 |
ccggtgttggatttgatgccgctcttctttcgagaaagaaactgcaaatgaaagggggtccagggaggataaggagaaggagacggttactgtttttgat |
655 |
Q |
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| T |
45313688 |
ccggtgttggatttgatgccgctcttctttcgagaaagcaactgcaaatgaaagggggtccggggaggataaggagaaggagacggttactgtttttgat |
45313589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 45314232 - 45314189
Alignment:
| Q |
12 |
atgaaagtaaaaaagaggattgggtaagttattcttattcttct |
55 |
Q |
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| T |
45314232 |
atgaaagtaaaaaagaggattgggtaagttattcttattcttct |
45314189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 6e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 150 - 311
Target Start/End: Original strand, 54631183 - 54631353
Alignment:
| Q |
150 |
ctcacttcaccgtgcaactgcaacaacaacaacctccaccaccat--cacc-------agttcatccctcccgtcatcctcttgtccgctccagacaccc |
240 |
Q |
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| T |
54631183 |
ctcacttcaccctgcaactgcaacaacaacaaccaccaccacgatgccaccgccgccgagatcatccctcccatcatcccattgtacgctccagacaccc |
54631282 |
T |
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| Q |
241 |
agcacgtcgataaccaagacgtttttcacactccgccggatgacccaccgcttccatcttccgtcattgat |
311 |
Q |
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| T |
54631283 |
agcacgtcgataaccaagacgtttttcacactccgccggaggacccaccgcttccatcttccgtcattgat |
54631353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 404 - 506
Target Start/End: Original strand, 54631625 - 54631729
Alignment:
| Q |
404 |
aatttgggtttgtttctttggagaaaaatgttagaaacccaacaa---gctgttcaaaatgatgctgaggatattaacatgattgatgttgagggaaata |
500 |
Q |
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| T |
54631625 |
aatttgggtttgattctttggaggaaaatgtt-gaaacccaacaacaagttgttcaaaatgatgctgaggatgttaacatggttgatgttgagggaaaca |
54631723 |
T |
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| Q |
501 |
agtcaa |
506 |
Q |
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|||||| |
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| T |
54631724 |
agtcaa |
54631729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 576 - 636
Target Start/End: Original strand, 54631733 - 54631793
Alignment:
| Q |
576 |
gctcttctttcgagaaagaaactgcaaatgaaagggggtccagggaggataaggagaagga |
636 |
Q |
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| T |
54631733 |
gctcttctttcgagaaagcgactgcaaatgaaagggggtctggggaggataaggataagga |
54631793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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