View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_34 (Length: 380)
Name: NF16504_low_34
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 42986809 - 42987162
Alignment:
| Q |
17 |
acccatgatagacaaaagacagccttttcaagatgagggtttcatctttatcttattaacaataggcctaaggcaaatttctttaggcttgctcttagaa |
116 |
Q |
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| T |
42986809 |
acccatgatagacaaaagacagccttttcaagatgagggtttcatctttatcttattaacaataggcctaaggcaaatttctttaggcttgctcttagaa |
42986908 |
T |
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| Q |
117 |
gataggaacaccattacaccaaggtaattgaaaggaaaggaaactcaccatgtgcaaagccaacaatgacaaagtttcttgctgacaaagaaccagagta |
216 |
Q |
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| T |
42986909 |
gataggaacaccattacaccaaggtaattgaaaggaaaggaaactcaccatgtgcaaagccaacaatgacaaagtttcttgctgacaaagaaccagagta |
42987008 |
T |
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| Q |
217 |
aagtttgcatttttgacgattaacatgttggtcagctgtgttaccattgagcttgaacaaagacatagcattttttaaattctttgtagtatcttggcag |
316 |
Q |
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| T |
42987009 |
aagtttgcatttttgacgattaacatgttggttagctgtgttaccattgagcttgaacaaagacatagcattttttaaattctttttagtatcttggcag |
42987108 |
T |
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| Q |
317 |
aaatcttaatctcatcagcataaagagaatgagtttgagtttgacactcctatg |
370 |
Q |
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| T |
42987109 |
aaatcgtaatctcatcagtataaagagaatgagtatgagtttgacactcctatg |
42987162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 224 - 346
Target Start/End: Complemental strand, 35088360 - 35088237
Alignment:
| Q |
224 |
catttttgacgattaacatgttggtcagctgtgttaccattgagcttgaacaaagacatagcattttttaaattctttgtagtatcttggcag-aaatct |
322 |
Q |
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||||||||| ||| |||||||||| ||||||||| ||||| ||||| ||||||||||||| |||||| |||||||||| |||||||||| ||| ||||| |
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| T |
35088360 |
catttttgaggatcaacatgttggccagctgtgtcaccatagagctagaacaaagacataacattttctaaattctttttagtatcttgacagaaaatca |
35088261 |
T |
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| Q |
323 |
taatctcatcagcataaagagaat |
346 |
Q |
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|||| |||||||| ||||||||| |
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| T |
35088260 |
taataacatcagcacaaagagaat |
35088237 |
T |
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