View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_35 (Length: 366)
Name: NF16504_low_35
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 32595636 - 32595964
Alignment:
| Q |
1 |
gacaatgagaattatagaaaaaatgcaacctgtgaaatctcaactgaattttgataaggataatccttttggagagcattgttacatctttcaaattgca |
100 |
Q |
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| T |
32595636 |
gacaatgagaattagagaaaaagtgcaacctgtgaaatctcaactgaattttgataaggatagtccttttggagagcattgttacatctttcaaattgca |
32595735 |
T |
|
| Q |
101 |
attgttaaaaacaaaaacctactaataacaacacattatagataaggttagattaactctgcatagtgcaggggtgggtggtggatcagatcaagtacac |
200 |
Q |
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| T |
32595736 |
attgttaaaaacaaaaacctactaataacaacacattatagataaggttagattaactctgcatagtgcaggggtgggtggtggatcagatcaagtacac |
32595835 |
T |
|
| Q |
201 |
aattcacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctgtcctggc |
300 |
Q |
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| T |
32595836 |
agttcacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctgtcctggc |
32595935 |
T |
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| Q |
301 |
tgcaacttgcgttgtgtctctctctacaa |
329 |
Q |
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| T |
32595936 |
tgcaacttgcgttgtgtctctctctacaa |
32595964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 32600258 - 32600555
Alignment:
| Q |
18 |
aaaaaatgcaacctgtgaaatctcaactgaattttgataaggataatccttttggagagcattgttacatctttcaaattgcaattgttaaaaacaaaaa |
117 |
Q |
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| T |
32600258 |
aaaaagtgcaacctgtgaaatctcaactgaatttagctaaggataataaaaaa--agagcattgttacttctttcaaattgcaattgttaaaaacaaaaa |
32600355 |
T |
|
| Q |
118 |
cctactaataacaacacattatagataaggttagattaactctgcatagtgcaggggtgggtggtggatcagatcaagtacacaattcacaattattcta |
217 |
Q |
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| T |
32600356 |
cctactaataaca-caattaatggataaggttagattgactctgcatagtgcagggatgg----tggatcagataaagcacaca-------attattcta |
32600443 |
T |
|
| Q |
218 |
ctacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctgtcctggctgcaacttgcgttgtgt |
317 |
Q |
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|||||||| |||||||||||||||||| ||| || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32600444 |
ctacattccctttacagttattgagttgttgaaagccactaattttccaacgcacgtttagccttctccagtgctgtcctggctgcaacttgctttgtgt |
32600543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 328
Target Start/End: Original strand, 31784076 - 31784213
Alignment:
| Q |
191 |
tcaagtacacaattcacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtg |
290 |
Q |
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||||||||||||||||| |||||||||||||| ||||| ||| |||||||||| |||||| |||| |||||||||||||||||||| ||||||| | |
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| T |
31784076 |
tcaagtacacaattcacgattattctactacaatcactacacaattattgagttgttgtaaggaactaattttccaatgcacgtttagcattctccaacg |
31784175 |
T |
|
| Q |
291 |
ctgtcctggctgcaacttgcgttgtgtctctctctaca |
328 |
Q |
| |
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||||| ||||||||| |||| |||||||||||| |||| |
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| T |
31784176 |
ctgtcttggctgcaatttgctttgtgtctctctgtaca |
31784213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 32802397 - 32802263
Alignment:
| Q |
194 |
agtacacaattcacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctg |
293 |
Q |
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|||||||||||||||||||||||||| |||||||| ||| |||||||||| ||| || |||| |||||||||||||||||||| ||||||| |||| |
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| T |
32802397 |
agtacacaattcacaattattctacttcattcactacacaattattgagttgttgaaaggaactaattttccaatgcacgtttagcattctccaacgctg |
32802298 |
T |
|
| Q |
294 |
tcctggctgcaacttgcgttgtgtctctctctaca |
328 |
Q |
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|| |||||| || |||| ||||||||||||||||| |
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| T |
32802297 |
tcttggctgaaatttgctttgtgtctctctctaca |
32802263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 329
Target Start/End: Complemental strand, 37391803 - 37391704
Alignment:
| Q |
230 |
tacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctgtcctggctgcaacttgcgttgtgtctctctctacaa |
329 |
Q |
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|||| |||||||||| |||||| | || |||||||||||||||| ||| ||||||| || ||||||| |||||| ||| ||||||| |||||||||| |
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| T |
37391803 |
tacatttattgagttgttgtaaggaaataattttccaatgcacgttaagcattctccaatgttgtcctgactgcaatttgatttgtgtcgctctctacaa |
37391704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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