View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_36 (Length: 362)
Name: NF16504_low_36
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_36 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 35296334 - 35295995
Alignment:
| Q |
22 |
gaagagtagtgctagtgaagcctttgtttaccatgtccataacaattgctgaatcaagctcaaattctacgaagagcgacaaagatctagcgaaagtaat |
121 |
Q |
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| T |
35296334 |
gaagagtagtgctagtgaagcctttgtttaccatgtccataacaattgctgaatcaagctcaaattctacga-gagcgacaaagatctagcgaaagtgat |
35296236 |
T |
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| Q |
122 |
accaagttgaagacccatcatcttagcccaaatagcattaaacatcacccaatttacaaaagaaacatttaataaagttcccattatgatcacggatgat |
221 |
Q |
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| T |
35296235 |
accaagttgaagacccatcatcttagcccaaatagcattaaacatcacccaacttacaaaagaaacctttaataaagttcccattatgatcacggatgat |
35296136 |
T |
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| Q |
222 |
gcccgcacaaacttattcatatgctttacaaagagacactttggaacaagaatatgcatgtcacatagtatgtcgtccaagacgcaagacccctgcggct |
321 |
Q |
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| T |
35296135 |
gcccgcacaaacttattcatatactttacaaagagacactttggaacaagaatatgcatgtcacatagtatgttgtccaagacgcaagacccctgcggct |
35296036 |
T |
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| Q |
322 |
gtatgcttaatttccttccttaggcctaacttctattcctt |
362 |
Q |
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| T |
35296035 |
gtatgcttaatttccttccttaggcctaacttctattcctt |
35295995 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 899932 - 899895
Alignment:
| Q |
325 |
tgcttaatttccttccttaggcctaacttctattcctt |
362 |
Q |
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| T |
899932 |
tgcttaattttcctccttaggcctaacttctattcctt |
899895 |
T |
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