View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_38 (Length: 346)
Name: NF16504_low_38
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_38 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 27499540 - 27499855
Alignment:
| Q |
19 |
tttttgtggcaatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaggtgggtatcaactccttgcattcttggct |
118 |
Q |
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| T |
27499540 |
tttttgtggcaatccaaaatccttgatattgataggtgtgggttaaaatccaggctttttctgatggcaaggtgggtatcaactccttgcattcttggct |
27499639 |
T |
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| Q |
119 |
taagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgattttaccatggttatgggtagtcaaagcttaatattgaaaggatagaaa |
218 |
Q |
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| T |
27499640 |
taagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgattttaccatggttatgggtagtcaaagcttaatattgaaatgatagaaa |
27499739 |
T |
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| Q |
219 |
tagaaacgtttgtttttggttggcaatggtgcacatatccttgaagttgattcatataagtatagttcttacccaattaagggaatgattcatttgtaga |
318 |
Q |
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| T |
27499740 |
tagaaacgtttgtttttagttggcaatggtgcacatatccttgaagttgattcatataagtatagttcctacccaattaagggaatgattcatttgtaga |
27499839 |
T |
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| Q |
319 |
tgctcaatattcttcg |
334 |
Q |
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| T |
27499840 |
tgctcaatattattcg |
27499855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 27504317 - 27504226
Alignment:
| Q |
82 |
atggcaaggtgggtatcaactccttgcattcttggcttaagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgatttt |
173 |
Q |
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| T |
27504317 |
atggcaaggtttgtatcaagtccttgcattcttgccctaagtcatcttctttcaagtattttggcagagtagggttttcatcacttgatttt |
27504226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 27544091 - 27544041
Alignment:
| Q |
65 |
aatccatgctttttctgatggcaaggtgggtatcaactccttgcattcttg |
115 |
Q |
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| T |
27544091 |
aatccatcctttttctaatggcaatgtggatatcaactccttgcattcttg |
27544041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 11439579 - 11439730
Alignment:
| Q |
28 |
caatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaggtgggtatcaactccttgcattcttggcttaagtcatc |
127 |
Q |
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| T |
11439579 |
caatccaaaatccttgatattgatgaaagtgggtactgatccatcctttttctaatggtaaggtttgtattaactccttgcattctttgcctaactcatc |
11439678 |
T |
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| Q |
128 |
atcttgcaagtatttggctacaaaagagttttcatcacttgattttaccatg |
179 |
Q |
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| T |
11439679 |
ttcttgcaagtattttggcacaagagagttttcatcacctaattttgccatg |
11439730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 11317997 - 11318117
Alignment:
| Q |
22 |
ttgtggcaatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaggtgggtatcaactccttgcattcttggcttaa |
121 |
Q |
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| T |
11317997 |
ttgtggtaagccaaaatccttgatattgatggaagtgggatgtaatccaacctttttctaatggcaaggtgggtatcaactccttacattcttggcctaa |
11318096 |
T |
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| Q |
122 |
gtcatcatcttgcaagtattt |
142 |
Q |
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| T |
11318097 |
ctcagctgcttgcatgtattt |
11318117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 15460419 - 15460309
Alignment:
| Q |
32 |
ccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaggtgggtatcaactccttgcattcttggcttaagtcatcatct |
131 |
Q |
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| T |
15460419 |
ccaaaatccttgatattggtgaaggtgggttgaaacccagcctttctccattggtaaggtttgtatcaactctttgcattctagggttatgtcatcttct |
15460320 |
T |
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| Q |
132 |
tgcaagtattt |
142 |
Q |
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| T |
15460319 |
tgcaagtattt |
15460309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 1773 - 1883
Alignment:
| Q |
32 |
ccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaggtgggtatcaactccttgcattcttggcttaagtcatcatct |
131 |
Q |
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| T |
1773 |
ccaaaatccttgatattggtgaaggtgggttgaaacccagcctttctccattggtaaggtttgtatcaactctttgcattctagggttatgtcatcttct |
1872 |
T |
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| Q |
132 |
tgcaagtattt |
142 |
Q |
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| T |
1873 |
tgcaagtattt |
1883 |
T |
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