View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_39 (Length: 345)
Name: NF16504_low_39
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 36772557 - 36772875
Alignment:
| Q |
10 |
attattctaagattatttgacttgtttttaaatttaattttgaaagtctgcgtgaatgaagaatttgatgtcctctctggattttatatatgtatatcaa |
109 |
Q |
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| T |
36772557 |
attattctaagattatttgacttgtttttaaatttaattttgaaagtctgcgtgaatgaagaatttgatgtcccctctggattttatatatgtatatcaa |
36772656 |
T |
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| Q |
110 |
gcattaaacagatacaagtctaatccacataagttgtggaaaacatttggaacaaatttctcaaataaattttgtgttcatcagaagctctttcaattga |
209 |
Q |
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| T |
36772657 |
gcattaaacagatacaagtctaatccacataagttgtggaaaacatttggaacaaatttctcaaataaattttgtgttcatcagaagctctttcaattga |
36772756 |
T |
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| Q |
210 |
tccattctttgattttccaatttccatttcaatgcttttatggcaaatcttggaactacacaaagaataccaacctcaaaaccttcatcccccaacaaca |
309 |
Q |
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| T |
36772757 |
tccattctttgattttccaatttccatttcaaagcttttatggcaaatcttggaactacacaaagaataccaacttcaaaaccttcat-ccccaacaaca |
36772855 |
T |
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| Q |
310 |
gacacatatgaaccaaaatc |
329 |
Q |
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| T |
36772856 |
gacacatatgaaccaaaatc |
36772875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 200 - 329
Target Start/End: Original strand, 36770497 - 36770631
Alignment:
| Q |
200 |
tttcaattgatccattctttgattttccaatttccatttcaatgcttttatggcaaatcttggaactacacaaagaa---taccaa---cctcaaaacct |
293 |
Q |
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| T |
36770497 |
tttcaattgatccattctttgatttttcagttttcacttcaaaagtgtcatggcaaatcttggaactacacaaagaatactaccaacctcctcaaaacct |
36770596 |
T |
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| Q |
294 |
tcatcccccaacaacagacacatatgaaccaaaatc |
329 |
Q |
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| T |
36770597 |
tcat-ccccaacaactgacacacacgaaccaaaatc |
36770631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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