View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_4 (Length: 617)
Name: NF16504_low_4
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 45405882 - 45406434
Alignment:
| Q |
1 |
atgtataaaagtagtgattaattgattgagttattgaactaattgtcataaacttttgtgtaggaattataactatggaccagcagggaaggccttagga |
100 |
Q |
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| T |
45405882 |
atgtataaaagtagtgattaattgattgagttattgtactaattgtcataaacttttgtgtaggaattataactatggaccagcagggaaggccttagga |
45405981 |
T |
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| Q |
101 |
tttgatgggctgaggaatccagagattgtatcaaacaattcagtgattgctttcaaaactgctctatggttttggatgacagagagaaaaccaatacctt |
200 |
Q |
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| T |
45405982 |
tttgatgggctgaggaatccagagattgtatcaaacaattcagtgattgctttcaaaactgctctatggttttggatgacagagagaaaaccaatacctt |
45406081 |
T |
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| Q |
201 |
cttgtcacaatgtgatggttggaaaatatttggcaacaaaagctgacatagctgctaatcgcacagctggttttggattggtgacaaatatagtcaatgg |
300 |
Q |
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| T |
45406082 |
cttgtcacaatgtgatggttggaaaatatttggcaacaaaagctgacatagctgctaatcgcacagctggttttggattggtgacaaatatagtcaatgg |
45406181 |
T |
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| Q |
301 |
tggattggaatgtggaattcctaatgatgcaagagtgaatgatcgaattggattttttcaaagatatactaagttgttcaatgtggatactggacctaat |
400 |
Q |
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| T |
45406182 |
tggattggaatgtggaattcctaatgatgcaagagtgaatgatcgaattggattttttcaaagatatactaagttgttcaatgtggatactggacctaat |
45406281 |
T |
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| Q |
401 |
ttggattgtggatatcagaaatcttttcaataattggttctaactataatttaattcctttatgtatgnnnnnnnnnnnnnnnnnnnnnnnnnactctgg |
500 |
Q |
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| T |
45406282 |
ttggattgtggatatcagaaatcttttcaataattggttctaactataatttaattcctttatgtatgttttcggtttttcttttttctttttactctgg |
45406381 |
T |
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| Q |
501 |
caaaagttcaataatcgctgcaatttataattagaaaattaatgaataaaaag |
553 |
Q |
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| T |
45406382 |
caaaagttcaataatcgctgcaatttataattagaaaattaatgaataaaaag |
45406434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 570 - 603
Target Start/End: Original strand, 45406447 - 45406480
Alignment:
| Q |
570 |
attccttcttgtttgaattacacgcagacatgat |
603 |
Q |
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| T |
45406447 |
attccttcttgtttgaattacacgcagacatgat |
45406480 |
T |
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