View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_40 (Length: 344)
Name: NF16504_low_40
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 10493366 - 10493046
Alignment:
| Q |
9 |
attattctttggtttgaatgagtctccggttgctccgagcaccccccttgcagggaggaagctaaatgtgttacgagtaatttaccaaatactatatttg |
108 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||| | |||||||||||||||||||||| |
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| T |
10493366 |
attactctttggtttgaatgagtcttcggttgctccgagcacccccctcgcaaggaggaagctaagtgtgttactaataatttaccaaatactatattta |
10493267 |
T |
|
| Q |
109 |
agtcattttgtatcaggtctatataaatgagcctttgagcatttgctcagtccaaaacaatatcaactcttctgttgttgagcgttttgagataatcata |
208 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
10493266 |
agtcattttgtatgaggtctatataaatgagcctttgagcatttgctcggtccaaaacaatatcaactcttgtgttgttgagcggtttgagataatcata |
10493167 |
T |
|
| Q |
209 |
ttagagagtgatttcattttaannnnnnnnatctaactttccttaatatggggcttgtgtgtgagcctttgcagtgtttgtcctacacttgaccctttgc |
308 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10493166 |
ttagagagtgatttcattttaattttttttatctaactttccttaatatgggacttgtgtgtgagcctttgcggtgtttgtcctacacttgaccctttgc |
10493067 |
T |
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| Q |
309 |
ttgtttttagtactattcttt |
329 |
Q |
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||||||||||||||||||||| |
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| T |
10493066 |
ttgtttttagtactattcttt |
10493046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 27639693 - 27639835
Alignment:
| Q |
14 |
tctttggtttgaatgagtctccggttgctccgagcaccccccttgcagggaggaagctaaatgtgttacgagtaatttaccaaatactatatttgagtca |
113 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||||| ||| |||| || |||||||||| |
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| T |
27639693 |
tctttggtttgaatgagtcttcggttgctccgagca-cccccttgcagggagg--------tgtgttgtgagtaatatactaaatgctggatttgagtca |
27639783 |
T |
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| Q |
114 |
ttttgtatcaggtctatataaatgagcctttgagcatttgctcagtccaaaa |
165 |
Q |
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|||||||| | |||| ||||||||||||||| ||||||||| |||||||| |
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| T |
27639784 |
ttttgtattgagcctatgtaaatgagcctttgatcatttgctcggtccaaaa |
27639835 |
T |
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