View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_41 (Length: 342)
Name: NF16504_low_41
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 34554666 - 34554349
Alignment:
| Q |
16 |
tttggacaattacgaaattcacaatcatcttccttctcagatgttcacaattttgtttactcacgcatcgaacttagtttcaaattttcgggtagcacag |
115 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34554666 |
tttgaacaattacaaaattcacaatcatcttccttctcagatgttcacaattttgtttactcacgcatcgaacttagtttcaaattttggggtagcacag |
34554567 |
T |
|
| Q |
116 |
aacacaagaaattccttatgctttgtggattgtttccggaagactttgacatacctattgaaagtttattatgtcacgcaatgggcttgggattgttcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34554566 |
aacacaagaaattccttatgctttgtggattgtttccggaagactttgacatacctattgaaagtttattatgtcacgcaatgggcttgggattgttcaa |
34554467 |
T |
|
| Q |
216 |
agctatcggtgagccatggaaagcaagaaatcgagtgaatagtttcgtggacgatctaaagagatgcttcttgttgttggatagcaatgtcccagggtgt |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34554466 |
agctatcggtgagccatggaaagcaagaaaccgagtgaatagttttgtggacgatctaaagagatgcttcttgttgttggatagcaatgtcccagggtgt |
34554367 |
T |
|
| Q |
316 |
gtgaagatacatgatatt |
333 |
Q |
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|||||||||||||||||| |
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| T |
34554366 |
gtgaagatacatgatatt |
34554349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 34566336 - 34566023
Alignment:
| Q |
20 |
gacaattacgaaattcacaatcatcttccttctcagatgttcacaattttgtttactcacgcatcgaacttagtttcaaattttcgggtagcacagaaca |
119 |
Q |
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|||| ||| |||||| ||||||||| |||||||||| ||| || ||||| ||| | |||| || |||||||| || |||| || |||| |||||| |
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| T |
34566336 |
gacatttaagaaattttcaatcatctcccttctcagacgttggaaaatttgtctaccccagcattgagcttagtttaaagtttttggacagcagagaaca |
34566237 |
T |
|
| Q |
120 |
caagaaattccttatgctttgtggattgtttccggaagactttgacatacctattgaaagtttattatgtcacgcaatgggcttgggattgttcaaagct |
219 |
Q |
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| T |
34566236 |
taagctcttccttatgctttgtggattgtatccagaagactttgacattcccattgaaagtttattgtgtcatggttttggcttgggtccgttcaaagac |
34566137 |
T |
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| Q |
220 |
atcggtgagccatggaaagcaagaaatcgagtgaatagtttcgtggacgatctaaagagatgcttcttgttgttggatagcaatgtcccagggtgtgtga |
319 |
Q |
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||| ||| ||||| ||||||||||||||||| ||| || ||||| ||||||| |||| || || ||||||||||||| ||| ||||||||||||| |
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| T |
34566136 |
atcagtgcatcatgggaagcaagaaatcgagtgcatacattggtggaagatctaaggagaaagtttttattgttggatagcagtgtgccagggtgtgtga |
34566037 |
T |
|
| Q |
320 |
agatacatgatatt |
333 |
Q |
| |
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|||| ||||||||| |
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| T |
34566036 |
agatgcatgatatt |
34566023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 34291731 - 34291645
Alignment:
| Q |
130 |
cttatgctttgtggattgtttccggaagactttgacatacctattgaaagtttattatgtcacgcaatgggcttgggattgttcaaa |
216 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| | ||| || | |||||||||||||||||| |
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| T |
34291731 |
cttatgctttgtggattatttccagaagactttgacattcctattgaaagtttattgtatcatgcttttggcttgggattgttcaaa |
34291645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 34371956 - 34372020
Alignment:
| Q |
115 |
gaacacaagaaattccttatgctttgtggattgtttccggaagactttgacatacctattgaaag |
179 |
Q |
| |
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||||||||| || |||| | ||||||||||||||||| || ||||||||||| ||||| ||||| |
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| T |
34371956 |
gaacacaagtcatgccttttcctttgtggattgtttccagaggactttgacattcctatagaaag |
34372020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 130130 - 130437
Alignment:
| Q |
16 |
tttggacaattacgaaattcacaatcatcttccttctcagatgttcacaattttgtttactcacgcatcgaacttagtttcaaattttcgggtagcacag |
115 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||| |||||||||||| ||| ||||||||||| |
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| T |
130130 |
tttgaacaattacaaaattcacagtcatcttccttcccagatgttcacaattatgtttactcgcgcatcgagcttagtttcaaaattttgggtagcacag |
130229 |
T |
|
| Q |
116 |
aacacaagaaattccttatgctttgtggattgtttccggaagactttgacatacctattgaaagtttattatgtcacgcaatgggcttgggattgttcaa |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||||||||||| || |||||||||| |||||| |||| ||||| ||||||||||||||||| |
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| T |
130230 |
aacacaagaagctccttatgctttgtggattatttccagaagactttgatattcctattgaaattttattgcgtcatgcaataggcttgggattgttcaa |
130329 |
T |
|
| Q |
216 |
agctatcggtgagccatggaaagcaagaaatcgagtgaatagtttcgtggacgatctaaagagatgcttcttgttgttggatagcaatgtcccagggtgt |
315 |
Q |
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||| | |||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
130330 |
agccgttggtgagccattgaaagcaagaaatcgagtgcgtagtttggtgggcgatctaaagagatgtttcttgttgttggacagcaatgttccagggtgt |
130429 |
T |
|
| Q |
316 |
gtgaagat |
323 |
Q |
| |
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|||||||| |
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| T |
130430 |
gtgaagat |
130437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 15896025 - 15895830
Alignment:
| Q |
21 |
acaattacgaaattcacaatcatcttccttctcagatgttcacaattttgtttactcacgcatcgaacttagtttcaaattttcgggtagcacagaacac |
120 |
Q |
| |
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||||||| |||||| ||||||||||||| ||||||||| | || ||||| || | ||||| || |||||||| || |||| ||| | || |||| || |
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| T |
15896025 |
acaattaagaaattttcaatcatcttcctcgtcagatgttgaaaaatttgtccaccctcgcattgagcttagtttaaagtttttgggaaacaaagaatac |
15895926 |
T |
|
| Q |
121 |
aagaaattccttatgctttgtggattgtttccggaagactttgacatacctattgaaagtttattatgtcacgcaatgggcttgggattgttcaaa |
216 |
Q |
| |
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||| ||||||||||||||||||||||||||| ||||||||||| || ||||||||| |||| || ||| ||| |||| |||||| |||||||| |
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| T |
15895925 |
aagctattccttatgctttgtggattgtttcctgaagactttgatattcctattgaatgtttgttgcatcatgcagtgggtttgggaatgttcaaa |
15895830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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