View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_43 (Length: 331)
Name: NF16504_low_43
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 22 - 322
Target Start/End: Original strand, 35026884 - 35027184
Alignment:
| Q |
22 |
atttgaagtacacttttagctaaaaattattttacaaaattgagataatttgaaatcaaatttacaaagtatgtgtttggttccgcgtccaaaaccctta |
121 |
Q |
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| T |
35026884 |
atttgaagtacacttttagctaaaaattattttacaaaattgagataatttgaaatcaaattaacaaagtatgtgtttggttccgcgtccaaaaccctta |
35026983 |
T |
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| Q |
122 |
gaactgcggcagaacacctcactgacgtggaagctacactttgtagcttagaaaatcaccgtgaaaaggtatgtcactgtcccttggtggtggccaaacg |
221 |
Q |
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| T |
35026984 |
gaactgcggcagaacacctcattgacgtggaagctacactttgtagcttagaaaatcaccgtgaaaaggtacgtcactgtcccttggtggtggccaaacg |
35027083 |
T |
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| Q |
222 |
ctcacccaaacatacgcaaacacacctcttttttaatatacnnnnnnntatttatcgaaccaaaaactctatagggtaaaactaatatccagcacctatg |
321 |
Q |
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| T |
35027084 |
ctcacccaaacatacgcaaacacacctcttttttaatatacaaaaaaatatttatcgaatcaaaaactctatagggtaaaactaatatccagcacctatg |
35027183 |
T |
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| Q |
322 |
c |
322 |
Q |
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| T |
35027184 |
c |
35027184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 35023172 - 35023261
Alignment:
| Q |
45 |
aaattattttacaaaattgagataatttgaaatcaaatttacaaagtatgtgtttggttccgcgtccaaaacccttagaactgcggcagaa |
135 |
Q |
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| T |
35023172 |
aaattatttcacaaaattgagatcgtttaaaatcaaatttacaa-gtatgtgtttggttccgcgttcaaaacccttggaactaaggcagaa |
35023261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 35023392 - 35023437
Alignment:
| Q |
278 |
gaaccaaaaactctatagggtaaaactaatatccagcacctatgct |
323 |
Q |
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| T |
35023392 |
gaaccaaaaactctataggatgaaactagtatccagcatctatgct |
35023437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 36862796 - 36862636
Alignment:
| Q |
41 |
ctaaaaattattttacaaaattgagataatttgaaatcaaatttacaaagtatgtgtttggttccgcgtccaaaacccttagaactgcggcagaacacct |
140 |
Q |
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| T |
36862796 |
ctaaaaattattttacaaaattgagataatttgaaatcaaatttacaaagtatgtatttggttc-gtgtccagaacccttacaactgcagcagaacacct |
36862698 |
T |
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| Q |
141 |
cactgacgtggaagctacactttgtagcttagaaaatcaccgtgaaaaggtatgtcactgtc |
202 |
Q |
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| T |
36862697 |
cattgacctggaagctactctttgtagcttagaaaatcaccgtgaaaaggtatgtcattgtc |
36862636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 36862586 - 36862532
Alignment:
| Q |
270 |
tatttatcgaaccaaaaactctatagggtaaaa-ctaatatccagcacctatgct |
323 |
Q |
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| T |
36862586 |
tatttatcgaaccaaaaactctataggataaaacctagtattcagcacctatgct |
36862532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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