View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_44 (Length: 329)
Name: NF16504_low_44
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 10916875 - 10916703
Alignment:
| Q |
10 |
ctacgtaggatctcaatcatattggtgaagagtttgattttttatttatgtttgnnnnnnntctgattaaaatgaaagaattcattgtatgtattctaca |
109 |
Q |
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| T |
10916875 |
ctacgtaggatctcgatcatattggtgaagagtttgattttttatttatgtttgaaaaaaatctgattaaaatgaaagaattcattgtatgtatcctaca |
10916776 |
T |
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| Q |
110 |
tgttcttcctacgaatatatggtcaaaaattctagatttttaaccaatctattttaatcttgaagtaataata |
182 |
Q |
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| T |
10916775 |
tgttcttcctacgaatatatggtaaaaaattctagatttttaagcaatctattttaatcttgaagtaataata |
10916703 |
T |
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Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 10916634 - 10916554
Alignment:
| Q |
229 |
agggagtaatttatttcctggcaaataaaacaaaaagcccgacatcaagacatcgactttatattacatttatttgccgtagtt |
312 |
Q |
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| T |
10916634 |
agggagtagtttatttcctggc---taaaacaaaaagcccgacatcaagacatcgactttatattacatttatttgccgcagtt |
10916554 |
T |
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