View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_45 (Length: 327)
Name: NF16504_low_45
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_45 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 3562533 - 3562843
Alignment:
| Q |
17 |
aattaggcttccaaatagtagggagagaatatggttaggatcatatgacacccaagagaaagcagcaagagcatttgatgcagccctttattgtctacgt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||| |
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| T |
3562533 |
aattaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgt |
3562632 |
T |
|
| Q |
117 |
ggtcctcatgcaagtttcaatttccctaacacacctctttccatcaatttagtttttcatcatagtgttagtcacaactctctttcccctcaagagattc |
216 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3562633 |
ggtcctcatgctagtttcaatttccctaacacacctcttaccatcaatttagtttttcatcatagtgttagtcacaactctctttcccctcaagagattc |
3562732 |
T |
|
| Q |
217 |
aagagattgctgcaaaatttgccaatgaattaccaattgagcttactcaagaagaagatcaacaagtaccttcagaatcacaaaatgatgccaattgcaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3562733 |
aagagattgctgcaaaatttgccaatgaattaccaattgagcttactcaagaagaagatcaacaagtaccttcagaatcacaaaatgatgccaattccaa |
3562832 |
T |
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| Q |
317 |
ttcttattcat |
327 |
Q |
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||||||||||| |
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| T |
3562833 |
ttcttattcat |
3562843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 3551360 - 3551640
Alignment:
| Q |
18 |
attaggcttccaaatagtagggagagaatatggttaggatcatatgacacccaagagaaagcagcaagagcatttgatgcagccctttattgtctacgtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3551360 |
attaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagagaaagcagcaagagcatttgatgcagccctttattgtctacgtg |
3551459 |
T |
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| Q |
118 |
gtcctcatgcaagtttcaatttccctaacacacctctttccatcaatttagtttttcatcatagtgttagtcacaactctctttcccctcaagagattca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||| | | ||||| ||||| ||||| | |||||||| || |||| || || |
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| T |
3551460 |
gtcctcatgcaagtttcaatttccctaacacacctcttaccatcaatgtagctgtgaatcatggtgttggtcaccaatctctttcaccagaagaaatcca |
3551559 |
T |
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| Q |
218 |
agagattgctgcaaaatttgccaatgaat------taccaattgagcttactcaagaagaagatcaacaagtaccttcaga |
292 |
Q |
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|||||||||||| |||||||||||||| | |||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
3551560 |
agagattgctgcgaaatttgccaatgagtcgtcgccaccaattgagctcactcaagaagaagatcatcaagtaccttcaga |
3551640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 3589069 - 3589360
Alignment:
| Q |
17 |
aattaggcttccaaatagtagggagagaatatggttaggatcatatgacacccaagagaaagcagcaagagcatttgatgcagccctttattgtctacgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||| |
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| T |
3589069 |
aattaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgt |
3589168 |
T |
|
| Q |
117 |
ggtcctcatgcaagtttcaatttccctaacacacctctttccatcaatttagtttttcatcatagtgttagtcacaactctctttcccctcaagagattc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||| | | ||||| ||||| |||| | |||||||| || ||||||||| |
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| T |
3589169 |
ggtcctcatgcaagtttcaatttccctaacacacctcttaccatcaatgtagctgtgaatcatggtgttggtcatcaatctctttcaccagaagagattc |
3589268 |
T |
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| Q |
217 |
aagagattgctgcaaaatttgccaatga---attaccaattgagcttactcaagaagaagatcaacaagtaccttcagaatcacaaaatgat |
305 |
Q |
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|||| ||||||| || ||||| ||||| | |||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||| |
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| T |
3589269 |
aagacgttgctgctaagtttgcaaatgagtcaccaccaattgagctcactcacgaagatgatcaacaagtaccttcagaagcacaaaatgat |
3589360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 3573777 - 3574063
Alignment:
| Q |
17 |
aattaggcttccaaatagtagggagagaatatggttaggatcatatgacacccaagagaaagcagcaagagcatttgatgcagccctttattgtctacgt |
116 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||| |
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| T |
3573777 |
aattaggcttccaaatagtcgtgagagaatatggttaggatcatatgacacacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgt |
3573876 |
T |
|
| Q |
117 |
ggtcctcatgcaagtttcaatttccctaacacacctctttccatcaatttagtttttcatcatagtgttagtcacaactctctttcccctcaagagattc |
216 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| || |||||||| ||| |||||| | || || | |||||||| || ||||| |||| |
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| T |
3573877 |
ggtcctcatgcaagtttcaatttccctaatacaccttttaccatcaatgtagcttttca---------tggttaccaatctctttcaccacaagaaattc |
3573967 |
T |
|
| Q |
217 |
aagagattgctgcaaaatttgccaatga---attaccaattgagcttactcaagaagaagatcaacaagtaccttcagaatcacaaaatgatgcca |
309 |
Q |
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|||| ||||||| || | ||| ||||| | |||||||||||| ||||||||| ||||||| |||||| | |||||||||||||||||||||| |
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| T |
3573968 |
aagaagttgctgctaagtatgcaaatgagtcaccaccaattgagctcactcaagaacaagatcatcaagtatcatcagaatcacaaaatgatgcca |
3574063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 10025216 - 10025496
Alignment:
| Q |
17 |
aattaggcttccaaatagtagggagagaatatggttaggatcatatgacacccaagagaaagcagcaagagcatttgatgcagccctttattgtctacgt |
116 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||| |
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| T |
10025216 |
aattaggcttccaaatagtcgtgagagaatatggttaggatcacatgacacacaagaaaaagcagctagagcatttgatgcagccctatattgtctacgt |
10025315 |
T |
|
| Q |
117 |
ggtcctcatgcaagtttcaatttccctaacacacctctttccatcaatttagtttttcatcatagtgttagtcacaactctctttcccctcaagagattc |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| |||||||| ||| ||||||| |||| || | |||||||| || |||||||||| |
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| T |
10025316 |
ggtcctcatgctagtttcaatttccctaatacacctcttaccatcaatgtagcttttcat-----ggtta---accaatctctttcaccacaagagattc |
10025407 |
T |
|
| Q |
217 |
aagagattgctgcaaaatttgccaatga---attaccaattgagcttactcaagaagaagatcaacaagtaccttcagaatcacaaaat |
302 |
Q |
| |
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|||| ||||||| || ||||| ||||| | |||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||| |
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| T |
10025408 |
aagaagttgctgctaagtttgcaaatgagtcaccaccaattgagctcactcatgaagaagatcatcaagtatcttcagaatcacaaaat |
10025496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 48645788 - 48645655
Alignment:
| Q |
21 |
aggcttccaaatagtagggagagaatatggttaggatcatatgacacccaagagaaagcagcaagagcatttgatgcagccctttattgtctacgtggtc |
120 |
Q |
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||||| ||||||||| | || ||||||||||||||||||||||| | ||||||||||| | |||||||||||| || ||||||||||| ||||||| |
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| T |
48645788 |
aggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgtggtc |
48645689 |
T |
|
| Q |
121 |
ctcatgcaagtttcaatttccctaacacacctct |
154 |
Q |
| |
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|||||||| ||||||||||| | | |||||||| |
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| T |
48645688 |
gtcatgcaaatttcaatttccttgatacacctct |
48645655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 48654201 - 48654068
Alignment:
| Q |
21 |
aggcttccaaatagtagggagagaatatggttaggatcatatgacacccaagagaaagcagcaagagcatttgatgcagccctttattgtctacgtggtc |
120 |
Q |
| |
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||||| ||||||||| | || ||||||||||||||||||||||| | ||||||||||| | |||||||||||| || ||||||||||| ||||||| |
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| T |
48654201 |
aggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgtggtc |
48654102 |
T |
|
| Q |
121 |
ctcatgcaagtttcaatttccctaacacacctct |
154 |
Q |
| |
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|||||||| ||||||||||| | | |||||||| |
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| T |
48654101 |
gtcatgcaaatttcaatttccttgatacacctct |
48654068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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