View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_48 (Length: 319)
Name: NF16504_low_48
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 8175440 - 8175158
Alignment:
| Q |
1 |
atcgaaatgcttg-attatctccggagggaacatgcaatcaaatttatgtataaattttttcaagaaaatgatctaatagcgagccaaaatatgtagctt |
99 |
Q |
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| T |
8175440 |
atcgaaatgcatgtattatctccaaagggaacatgtaatcaaatttttgtataaattttttcaagaaaatgatctaatagcgagccaaaatatgtagctt |
8175341 |
T |
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| Q |
100 |
tgatagaaaggctcagaaaattggttgaattcagagctagaattatattaacctatattaacctgaggactctcgattggtcataagctgattagaacaa |
199 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8175340 |
tgatagcaaggctcagaaaattggttgacttcagagctagaattatattaacctatattaacctgaggactcttaattggtcataagctgattagaacaa |
8175241 |
T |
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| Q |
200 |
agctataaatgttagagtgatcctaatcttttggaatacaatgatgat-------gtgccaataagttcagaattggttctta |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
8175240 |
agctataaatgttagagtgatcctaatcttttggaatacaatgatgatggactacgtgccaataagttcagaaatggttctta |
8175158 |
T |
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