View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_5 (Length: 609)
Name: NF16504_low_5
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 3283514 - 3284105
Alignment:
| Q |
1 |
atggttattggactgttgctgcttgtagtccaagcgttgttgatttggggaatgttggaattgttgggctctgggacgaagttcttgggcttatgggcaa |
100 |
Q |
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| T |
3283514 |
atggttattggactgttgctgcttgtagtccaagcgttgttgatttggggaatgttggaattgttgggctctgggacgaagttcttgggcttatgggcaa |
3283613 |
T |
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| Q |
101 |
aaggaaggtcaagtgaggcgcaatattttagggcccgattttacccaccctcacgtttcctcggaaaatcacacatgatttcggaagtatacacattgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3283614 |
aaggaaggtcaagtgaggcgcaatattttagggcccgattttacccaccctcacgtttcctcggaaaatcacacatgatttcggaagtatacacattgag |
3283713 |
T |
|
| Q |
201 |
agtagagtgcttgtggggatgggaaaagttgagctctaatttaaagagtattggtatcgacactcatgttctcgtgactacatctagacttttcggctat |
300 |
Q |
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| T |
3283714 |
agtagagtgcttgtggggatgggaaaagttgagctctaatttaaagagtactggtatcgacactcatgttctcgtgactacatctagacttttcggctat |
3283813 |
T |
|
| Q |
301 |
gtttgaattggcatatggtgaaatgaagtgaaatagaataatcttgttagattttaaaaatggacatatcctatttcatttcattttataccatcaatac |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3283814 |
gtttgaattggcatatggtgaaatgtagtgaaatagaataatcttgttagattttaaaaatggacatatcctatttcatttcattttataccatcaatac |
3283913 |
T |
|
| Q |
401 |
aaacataccatttggaagtttattttttaatatatgcttttagaagatctaggtgtagtagcaagaccctaagtgttaatactagtgccctaatttgagt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3283914 |
gaacataccatttggaagtttattttttaatatatgcttttagaagatctaggtgtagtagcaagaccctaagtgttaatactagtgccctaatttgagt |
3284013 |
T |
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| Q |
501 |
agtaacttgaaaacaacttgtttggaagcttctcaattggcaagcaagagaaacaaaattgtctgatttagatagattctgacaagttgtta |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3284014 |
agtaacttgaaaacaacttgtttggaagcttctcaattggcaagcaggagaaacaaaattgtctgatttagatagattctgacaagttgtta |
3284105 |
T |
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