View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_52 (Length: 306)
Name: NF16504_low_52
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 207
Target Start/End: Original strand, 36001654 - 36001822
Alignment:
| Q |
42 |
ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactagcttctttacattcacggattaagaagctcga |
141 |
Q |
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| T |
36001654 |
ccatcaacaacgcttttgctgaccgatcaagtgcattgttgacagttcaaacactttcatcagaactagcttctttacattcacggattgagaagctcga |
36001753 |
T |
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| Q |
142 |
atttgct---tccataatatttggtggagacaagtcttggttgtagaaaattgaagagttgaaagaagc |
207 |
Q |
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| T |
36001754 |
agttgcttcatccagaatatttggtggagacaagtctaggatgcggaaaattgaagaattgaaagaagc |
36001822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 36001842 - 36001888
Alignment:
| Q |
206 |
gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcata |
252 |
Q |
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| T |
36001842 |
gctaaaatttgtgcagatagagagtatgaacgaatcaaggtaacata |
36001888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 36012872 - 36012940
Alignment:
| Q |
42 |
ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactag |
110 |
Q |
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| T |
36012872 |
ccatcaacaatgcaacttccgatcaatgaagtgcattgttgatggttcaaacactcttatcagaactag |
36012940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 208
Target Start/End: Original strand, 36015599 - 36015763
Alignment:
| Q |
42 |
ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactagcttctttacattcacggattaagaagctcga |
141 |
Q |
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| T |
36015599 |
ccatcaataatgcattttccgactgatcaagtgcattggcgatagttcaaaca-----ttcagaac-aacttctttaaattcactaattgagaagctcga |
36015692 |
T |
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| Q |
142 |
atttgct---tccataat-atttggtggagacaagtcttggttgtagaaaattgaagagttgaaagaagct |
208 |
Q |
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| T |
36015693 |
agttgcttcatccagaataatttgacggagacaggtctaggttgcggaaaattgaagtgttgaaagaagct |
36015763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 36013037 - 36013099
Alignment:
| Q |
206 |
gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcatatagatatattttttgttt |
270 |
Q |
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| T |
36013037 |
gctaaaatttgtgcagatagag--tatgaatgaatcaaggtaacaaataggtacattttttgttt |
36013099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 36015795 - 36015844
Alignment:
| Q |
206 |
gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcatatag |
255 |
Q |
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| T |
36015795 |
gctaaaatttgtgaagatagagaatatcaacgaatcaaggtaacatatag |
36015844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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