View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_54 (Length: 293)
Name: NF16504_low_54
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 29280400 - 29280137
Alignment:
| Q |
1 |
tcctcttgcttctcctcaacctttggttgttcctatactcaatcaaaaagaataaaagtaaccaaattagtaccatggtccaagaacttatgttgactca |
100 |
Q |
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| T |
29280400 |
tcctcttgcttctcctcaacctttggttgttcctatactcaatcaaaaagaataaaagtaaacaaattagtaccatggtccaagaacttatgttgactca |
29280301 |
T |
|
| Q |
101 |
ctaatggccattttacaactgtcgtcaaagaattttgaaccattgtttaaattgttagcaatcgcaattgcagtcgcaatataaaaagttttgagg--tc |
198 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||| || |
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| T |
29280300 |
ctaatgaccattttacaactgtcgttaaagaattttgaaccattgtttaaattgttggcaatcg------------caatataaaaggttttgaggtctc |
29280213 |
T |
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| Q |
199 |
tgcaacggtatcacaaccattagaccacatcagctgccttttttatggtacaaaggtttgcagcgtaaccacaattt |
275 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
29280212 |
tgcaatggtatcacaaccattagaccacatcagctg-cttttttatggtacaaaggtttgcagcctaaccacaattt |
29280137 |
T |
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