View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16504_low_56 (Length: 286)

Name: NF16504_low_56
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16504_low_56
NF16504_low_56
[»] scaffold0060 (1 HSPs)
scaffold0060 (203-286)||(49261-49343)
[»] scaffold0468 (1 HSPs)
scaffold0468 (203-282)||(422-500)
[»] chr8 (4 HSPs)
chr8 (203-282)||(8319869-8319947)
chr8 (203-282)||(25368973-25369051)
chr8 (203-282)||(4239558-4239638)
chr8 (204-237)||(23083114-23083147)
[»] chr2 (6 HSPs)
chr2 (203-277)||(9181956-9182030)
chr2 (203-282)||(30654372-30654452)
chr2 (203-282)||(17971903-17971983)
chr2 (203-282)||(25480102-25480182)
chr2 (203-282)||(25487708-25487788)
chr2 (203-282)||(30649690-30649770)
[»] scaffold0045 (1 HSPs)
scaffold0045 (203-282)||(81820-81896)
[»] chr3 (4 HSPs)
chr3 (203-275)||(24755737-24755808)
chr3 (203-275)||(24764734-24764805)
chr3 (203-282)||(23662651-23662731)
chr3 (203-237)||(8886756-8886790)
[»] scaffold0070 (1 HSPs)
scaffold0070 (203-282)||(62072-62150)
[»] chr5 (8 HSPs)
chr5 (203-259)||(9912123-9912178)
chr5 (197-282)||(42000204-42000290)
chr5 (203-282)||(560250-560330)
chr5 (203-282)||(26670779-26670859)
chr5 (203-282)||(26942376-26942456)
chr5 (203-282)||(36938730-36938810)
chr5 (203-236)||(23978696-23978729)
chr5 (202-282)||(39521928-39522009)
[»] chr4 (2 HSPs)
chr4 (226-282)||(41815500-41815556)
chr4 (203-282)||(31272256-31272336)
[»] chr1 (2 HSPs)
chr1 (203-282)||(25853891-25853971)
chr1 (203-282)||(10138804-10138884)


Alignment Details
Target: scaffold0060 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 49261 - 49343
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatttcgaacccaagagagttaaactcactagtaaagc 286  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49261 caacttgtcttatttt-tgaacttgggattgtctgacataagttcggatttcgaacccaagagagttaaactcactagtaaagc 49343  T

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Target: scaffold0468 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 422 - 500
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatttcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  422 caacttgtcttattttttgaacttggtattgtc-gacataagttcagatttcgaacccaagagcgttaaactcactagta 500  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 8319869 - 8319947
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatttcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  8319869 caacttgtcttatttt-tgaacttgggattgtctgacataagttcggatttcgaagccaagagagttaaactcactagta 8319947  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 25368973 - 25369051
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatttcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||| ||||||||||||||  |||||| |||||  ||||||||||||||| |||||||||||||||||    
T  25368973 caacttgtcttatttt-tgaacttgggattgcttgacatgagttcgaatttcgaacccaagaaagttaaactcactagta 25369051  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 4239558 - 4239638
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  4239558 caacttgtcttattttttgaacttgggattgtctggactatatttagattctggaccccaagagagttgaactcactagta 4239638  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 23083114 - 23083147
Alignment:
Q  204 aacttgtcttattttttgaacttgggattgtctg 237  Q
    ||||||||||||||||||||||||||||||||||    
T  23083114 aacttgtcttattttttgaacttgggattgtctg 23083147  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 9181956 - 9182030
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatttcgaacccaagagagttaaactcac 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  9181956 caacttgtcttattttttgaacttgggattgtctgacataagttcgaatttcgaacccaagagagataaactcac 9182030  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 30654452 - 30654372
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||||||| |||  || ||||| | || |||||||||||| ||||||||||||    
T  30654452 caacttgtcttattttttgaacttgggattgtctgaaatatatttagattctggaccccaagagagttgaactcactagta 30654372  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 17971903 - 17971983
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  17971903 caacttgtcttattttttgaacttgggattgtctggactatatttagattctggatcccaagagagttgaactcactagta 17971983  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 25480102 - 25480182
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  25480102 caacttgtcttattttttgaacttgggattgtctggactatatttagattctggaccccaagagagttgaactcactagta 25480182  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 25487708 - 25487788
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  25487708 caacttgtcttattttttgaacttgggattgtctggactatatttagattctggaccccaagagagttgaactcactagta 25487788  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 30649770 - 30649690
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  30649770 caacttgtcttattttttgaacttgggattgtctggactatatttagattctggaccccaagagagttgaactcactagta 30649690  T

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Target: scaffold0045 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 81896 - 81820
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatttcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||   |||||||||||  |||||||||||||||||| ||||||||||||||    
T  81896 caacttgtcttattttttgaacttgggattg---gacataagttcgaatttcgaacccaagagagataaactcactagta 81820  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 24755737 - 24755808
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatttcgaacccaagagagttaaactc 275  Q
    |||||||||||||||||| ||||||||||||| |||||||||||  |||||| ||||||||||||||||||||    
T  24755737 caacttgtcttatttttt-aacttgggattgtttgacataagtttggatttcaaacccaagagagttaaactc 24755808  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 24764734 - 24764805
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatttcgaacccaagagagttaaactc 275  Q
    |||||||||||||||||| ||||||||||||| |||||||||||  |||||| ||||||||||||||||||||    
T  24764734 caacttgtcttatttttt-aacttgggattgtttgacataagtttggatttcaaacccaagagagttaaactc 24764805  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 23662651 - 23662731
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||| ||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||||||||||||||||    
T  23662651 caacttatcttattttttgaacttgggattgtctgtactatatttagattctggaccccaagagagttaaactcactagta 23662731  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 8886790 - 8886756
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctg 237  Q
    |||||||||||||||||||||||||||||||||||    
T  8886790 caacttgtcttattttttgaacttgggattgtctg 8886756  T

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Target: scaffold0070 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 62150 - 62072
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatttcgaacccaagagagttaaactcactagta 282  Q
    ||||||||||||||||| |||||||||||||  |||||| |||||  ||||||||||||||| |||||||||||||||||    
T  62150 caacttgtcttattttt-gaacttgggattgcttgacatgagttcgaatttcgaacccaagaaagttaaactcactagta 62072  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 9912178 - 9912123
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatttcgaacc 259  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  9912178 caacttgtcttattttt-gaacttgggattgtttgacataagttcagatttcgaacc 9912123  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 42000290 - 42000204
Alignment:
Q  197 ataattcaacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    ||||| |||||||||||||||||||||||| ||||||||| | |||  || ||||| | || |||||||||||| ||||||||||||    
T  42000290 ataatccaacttgtcttattttttgaacttcggattgtctaaaatatatttagattctggaccccaagagagttgaactcactagta 42000204  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 560330 - 560250
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  560330 caacttgtcttattttttgaacttgggattgtctggactatatttagattctggatcccaagagagttgaactcactagta 560250  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 26670859 - 26670779
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  26670859 caacttgtcttattttttgaacttgggattgtctggactatatttagattctggaccccaagagagttgaactcactagta 26670779  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 26942456 - 26942376
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  26942456 caacttgtcttattttttgaacttgggattgtctggactatatttagattctggaccccaagagagttgaactcactagta 26942376  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 36938730 - 36938810
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  36938730 caacttgtcttattttttgaacttgggattgtctggactatatttagattctggaccccaagagagttgaactcactagta 36938810  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 23978696 - 23978729
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtct 236  Q
    ||||||||||||||||||||||||| ||||||||    
T  23978696 caacttgtcttattttttgaacttgagattgtct 23978729  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 39522009 - 39521928
Alignment:
Q  202 tcaacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    ||||||||||||||||||||||||||| ||||| ||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  39522009 tcaacttgtcttattttttgaacttggaattgtgtggactatatttagattctggaccccaagagagttgaactcactagta 39521928  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 41815556 - 41815500
Alignment:
Q  226 tgggattgtctgacataagttcagatttcgaacccaagagagttaaactcactagta 282  Q
    ||||||||| ||||||||||||  ||||||| |||||||||||||||||||||||||    
T  41815556 tgggattgtttgacataagttcgaatttcgatcccaagagagttaaactcactagta 41815500  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 31272336 - 31272256
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||| ||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||||||||||||||||    
T  31272336 caacttatcttattttttgaacttgggattgtctgtactatatttagattctggaccccaagagagttaaactcactagta 31272256  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 25853971 - 25853891
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||||||||||||||||||||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  25853971 caacttgtcttattttttgaacttgggattgtctggactatatttagattctggaccccaagagagttgaactcactagta 25853891  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 10138884 - 10138804
Alignment:
Q  203 caacttgtcttattttttgaacttgggattgtctgacataagttcagatt-tcgaacccaagagagttaaactcactagta 282  Q
    |||||||||||||||||| ||||||||||||||||   ||  || ||||| | || |||||||||||| ||||||||||||    
T  10138884 caacttgtcttattttttaaacttgggattgtctggactatatttagattctggaccccaagagagttgaactcactagta 10138804  T

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