View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16504_low_61 (Length: 270)
Name: NF16504_low_61
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_61 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 56240438 - 56240653
Alignment:
| Q |
1 |
aaagaacagaggccctacatgttaactttgatggtagtagttatccaaaatacattttcaaaattatgtaggcatggcattgaataccnnnnnnnnggca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
56240438 |
aaagaacagaggccctacatgttaactttgatggtagtagttatccaaaatacattttcaaaattatgtaggcatggcattgaataccttttttttggca |
56240537 |
T |
|
| Q |
101 |
ctgaataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaagttctgaatcctgcacaggtatgtgctcctgaagaccgactgtgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56240538 |
ctgaataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaacttctgaatcctgcacaggtatgtgctcctgaagaccgactgtgt |
56240637 |
T |
|
| Q |
201 |
tgagctgtgaaacatt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
56240638 |
tgagctgtgaaacatt |
56240653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 23946835 - 23947048
Alignment:
| Q |
1 |
aaagaacagaggccctacatgttaactttgatggtagtagttatccaaaat--ac---------attttcaaaattatgtaggcatggcattgaataccn |
89 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23946835 |
aaagaatagaggtcctacatgttaactttgatggtagtagttatccaaaatgaactgaattattattttcaaaattatgtaggcatgacattgaatacct |
23946934 |
T |
|
| Q |
90 |
nnnnnnnggcactgaataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaagttctgaatcctgcacaggtatgtgctcctgaag |
189 |
Q |
| |
|
|||| || ||| ||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23946935 |
tttttttggcattggatagcttgacacctttacgaaaattatggtaaatctcgacagagagaacaacttctgaatcctgcacaggtatgtgctcctgaag |
23947034 |
T |
|
| Q |
190 |
accgactgtgttga |
203 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
23947035 |
acccagtgtgttga |
23947048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 16106109 - 16105896
Alignment:
| Q |
1 |
aaagaacagaggccctacatgttaactttgatggtagtagttatccaaaat--ac---------attttcaaaattatgtaggcatggcattgaataccn |
89 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16106109 |
aaagaatagaggtcctatatgttaactttgatggtagtagttatccaaaatgaactgaattattattttcaaaattatgtaggcatgacattgaatacct |
16106010 |
T |
|
| Q |
90 |
nnnnnnnggcactgaataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaagttctgaatcctgcacaggtatgtgctcctgaag |
189 |
Q |
| |
|
|||| || ||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16106009 |
tttttttggcattggatagcttgacaccttttcgaaaattatggaaaatctcgacagagagaacaacttctgaatcctgcacaggtatgtgctcctgaag |
16105910 |
T |
|
| Q |
190 |
accgactgtgttga |
203 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
16105909 |
acccagtgtgttga |
16105896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 16624399 - 16624287
Alignment:
| Q |
104 |
aataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaagttctgaatcctgcacaggtatgtgctcctgaagaccgactgtgttga |
203 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||||| ||||| ||||||| ||||| ||| |||| |||||||||||||||||| || ||||||||| |
|
|
| T |
16624399 |
aataccttgacacctttttgaacattatggtaaatctccacagaaagaacaacttctggatcatgcaaaggtatgtgctcctgaagtcctcctgtgttga |
16624300 |
T |
|
| Q |
204 |
gctgtgaaacatt |
216 |
Q |
| |
|
||| ||||||| |
|
|
| T |
16624299 |
cctgacaaacatt |
16624287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University