View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_62 (Length: 268)
Name: NF16504_low_62
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 32539044 - 32539254
Alignment:
| Q |
15 |
catgacattcatccaattgagcattgaaaagagggaaggattggaaagaaaaagagagtagagacgaattagtgttctgttcagcatcaaaatcatcgca |
114 |
Q |
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| T |
32539044 |
catgacattcatccaattgagcattgagaagagggaaggattggaaagaaaaagagagtagagacgaattagtgtt-----cagcatcaaaatcatcgca |
32539138 |
T |
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| Q |
115 |
gcttgtgtattagtgtgcagataacaaatgatataatttcatcacaataagacaaagaacatacaataagacaacaaggcataataaatcgtagtggtca |
214 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32539139 |
gcttgtgtattagtgtgcagacaaaaaatgatataatttcatcacaataagacaaagaacatacaataagacaacaaggcataataaatcgtagtggtca |
32539238 |
T |
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| Q |
215 |
tgatcttggcctcatg |
230 |
Q |
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|||||||||||||||| |
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| T |
32539239 |
tgatcttggcctcatg |
32539254 |
T |
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