View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16504_low_64 (Length: 251)

Name: NF16504_low_64
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16504_low_64
NF16504_low_64
[»] chr3 (9 HSPs)
chr3 (76-245)||(8886496-8886664)
chr3 (78-250)||(23662772-23662943)
chr3 (77-245)||(3686657-3686841)
chr3 (77-250)||(18470485-18470674)
chr3 (136-248)||(48434809-48434921)
chr3 (77-134)||(12967310-12967367)
chr3 (77-243)||(24755848-24756011)
chr3 (77-243)||(24764845-24765008)
chr3 (184-245)||(12967184-12967245)
[»] chr5 (10 HSPs)
chr5 (77-245)||(560037-560204)
chr5 (77-250)||(9911892-9912062)
chr5 (77-250)||(26670549-26670738)
chr5 (77-250)||(26942146-26942335)
chr5 (136-250)||(39521774-39521887)
chr5 (76-245)||(41999975-42000158)
chr5 (77-245)||(36938856-36939040)
chr5 (77-250)||(36426912-36427101)
chr5 (77-127)||(39521698-39521748)
chr5 (180-248)||(13585099-13585167)
[»] chr2 (9 HSPs)
chr2 (77-249)||(9182077-9182246)
chr2 (77-245)||(30654159-30654326)
chr2 (77-245)||(17972029-17972201)
chr2 (77-250)||(30649460-30649649)
chr2 (77-245)||(30616213-30616376)
chr2 (180-248)||(40036141-40036209)
chr2 (91-244)||(3174037-3174187)
chr2 (204-244)||(25480210-25480250)
chr2 (204-244)||(25487816-25487856)
[»] chr4 (11 HSPs)
chr4 (78-250)||(37261218-37261389)
chr4 (78-250)||(31272042-31272215)
chr4 (71-141)||(19105280-19105350)
chr4 (183-250)||(32222523-32222590)
chr4 (183-250)||(33465680-33465747)
chr4 (77-141)||(33465816-33465880)
chr4 (199-250)||(39319071-39319122)
chr4 (183-245)||(19105406-19105468)
chr4 (77-133)||(39318923-39318980)
chr4 (183-237)||(15134740-15134794)
chr4 (208-249)||(41815422-41815463)
[»] chr1 (3 HSPs)
chr1 (77-250)||(25853676-25853850)
chr1 (78-239)||(10138571-10138748)
chr1 (207-245)||(47453525-47453563)
[»] chr8 (14 HSPs)
chr8 (77-245)||(4239684-4239856)
chr8 (77-245)||(40127237-40127421)
chr8 (77-249)||(8319989-8320156)
chr8 (77-248)||(25369094-25369262)
chr8 (77-250)||(23083234-23083411)
chr8 (180-250)||(17023623-17023692)
chr8 (180-250)||(17554116-17554185)
chr8 (183-244)||(38183968-38184029)
chr8 (131-248)||(4539858-4539975)
chr8 (77-132)||(17023505-17023560)
chr8 (77-132)||(17553998-17554053)
chr8 (183-245)||(34117025-34117087)
chr8 (176-243)||(19952762-19952829)
chr8 (77-125)||(38184073-38184120)
[»] scaffold0045 (1 HSPs)
scaffold0045 (119-251)||(81653-81780)
[»] chr6 (4 HSPs)
chr6 (77-249)||(15997975-15998146)
chr6 (77-120)||(16836324-16836367)
chr6 (180-248)||(10490784-10490852)
chr6 (176-248)||(14776891-14776963)
[»] scaffold0070 (2 HSPs)
scaffold0070 (77-248)||(61861-62029)
scaffold0070 (77-110)||(66063-66096)
[»] scaffold0468 (1 HSPs)
scaffold0468 (78-249)||(542-712)
[»] scaffold0060 (1 HSPs)
scaffold0060 (77-249)||(49381-49554)
[»] chr7 (4 HSPs)
chr7 (183-237)||(21667959-21668013)
chr7 (77-125)||(21667830-21667878)
chr7 (76-141)||(10389827-10389892)
chr7 (195-248)||(15984856-15984909)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 8886496 - 8886664
Alignment:
Q  76 agtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 175  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||| |||||| |||   | ||||     
T  8886496 agtgatcagatatagtgcccccactagttcttaatttttagaaggaaatttattttgcccccactagtgcccccactat-tctttagtttcaaggggtaa 8886594  T
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
     || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8886595 atatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatg 8886664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 23662943 - 23662772
Alignment:
Q  78 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtactt 177  Q
    |||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||  ||||||||||||||||||| |||||| ||||  | ||||  |    
T  23662943 tgatcagatatagtgcccccactagttcttgatttttagaaggaaatttattttgctcccactagtgcccccactat-tctttagtttaaaggggtaaat 23662845  T
Q  178 aatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    | || |||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  23662844 atttacatagaaatcagcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcg 23662772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 3686657 - 3686841
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgcc-----------------accactagtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||                  ||||||||||||||||||| ||||    
T  3686657 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 3686755  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    || |||   | ||||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  3686756 tagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatg 3686841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 18470485 - 18470674
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgcc-----------------accactagtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||                  ||||||||||||||||||| ||||    
T  18470485 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 18470583  T
Q  160 taatttacggaggtact-taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    || || | || |  | | || |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||    
T  18470584 tagttaaaggggtaaatatattttcatagaaatcgccatcttttaattctatgatcactttagcatttaggtcat-aaacctatatgcttcg 18470674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 48434921 - 48434809
Alignment:
Q  136 ccactagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataa 235  Q
    ||||||||||||||||||| |  ||||||||  | || | |||||||||||||||||  |||||||| ||||||||||||| | |||||||| |||||||    
T  48434921 ccactagtgcccccactattttcttaatttaaaggggaatttaatttcatagaaatcatcatcttttgattctatgatcacataaacatttaagtcataa 48434822  T
Q  236 aacttatatgctt 248  Q
    |||||||||||||    
T  48434821 aacttatatgctt 48434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 12967367 - 12967310
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgcc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12967367 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttattttgcc 12967310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 24756011 - 24755848
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagg-gaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 175  Q
    ||||||||||||| |||||||| ||||||||||| |  | |||| |||||||||||  | ||||||||| ||||||||| |||||||||||| | |||||    
T  24756011 gtgatcagatatactgcccccaatagttcttaatat--acaaggagaatttagtttatccccactagtggccccactat-tctttaatttacaggggtac 24755915  T
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttata 243  Q
    ||  || ||||||||||   ||| ||| | | |||||||||||||||||||| || ||||||| ||||    
T  24755914 ttgctt-catagaaatcaatatcgtttgactttatgatcactttaacatttaagttataaaacctata 24755848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 24765008 - 24764845
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagg-gaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 175  Q
    ||||||||||||| |||||||| ||||||||||| |  | |||| |||||||||||  | ||||||||| ||||||||| |||||||||||| | |||||    
T  24765008 gtgatcagatatactgcccccaatagttcttaatat--acaaggagaatttagtttatccccactagtggccccactat-tctttaatttacaggggtac 24764912  T
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttata 243  Q
    ||  || ||||||||||   ||| ||| | | |||||||||||||||||||| || ||||||| ||||    
T  24764911 ttgctt-catagaaatcaatatcgtttgactttatgatcactttaacatttaagttataaaacctata 24764845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 12967245 - 12967184
Alignment:
Q  184 atagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    |||||||||  |||| ||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  12967245 atagaaatcaacatcgttttattctatgatcactttagcatttaggtcataaaacctatatg 12967184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 560037 - 560204
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||| |||   | ||||      
T  560037 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactagtgcccccactat-tctttagtttcaaggggtaaa 560135  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  560136 tatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatg 560204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 9911892 - 9912062
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    |||||||||| ||||||||||||||||  ||||| |  ||  ||||||||| ||| || ||||||||||| ||||||| |||||||||||||| ||||||    
T  9911892 gtgatcagatgtagtgcccccactagtcattaatatacaag-gggaatttaatttacctccactagtgcctccactat-tctttaatttacgggggtact 9911989  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| ||||    
T  9911990 ta-tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatgtttcg 9912062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 26670549 - 26670738
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacc-----------------actagtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||                 ||||||||||||||||| ||||    
T  26670549 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccgataatgttgtgctcccactagtgcccccactat-tctt 26670647  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    || ||||  | ||||  || || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  26670648 tagtttaaaggggtaaatatttacatagaaatcggtgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcg 26670738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 26942146 - 26942335
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacc-----------------actagtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||                 ||||||||||||||||| ||||    
T  26942146 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccgataatgttgtgctcccactagtgcccccactat-tctt 26942244  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    || ||||  | ||||  || || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  26942245 tagtttaaaggggtaaatatttacatagaaatcggtgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcg 26942335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 39521774 - 39521887
Alignment:
Q  136 ccactagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataa 235  Q
    ||||||||||||||||||| |||||| ||||  | ||||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39521774 ccactagtgcccccactat-tctttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataa 39521872  T
Q  236 aacttatatgcttcg 250  Q
    ||| |||||| ||||    
T  39521873 aacctatatgtttcg 39521887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 41999975 - 42000158
Alignment:
Q  76 agtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgcc-----------------accactagtgcccccactatatct 158  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||                  ||||||||||||||||||| |||    
T  41999975 agtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tct 42000073  T
Q  159 ttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    ||| ||||  | ||||  || || ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  42000074 ttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaaca--taggtcataaaacctatatg 42000158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 36939040 - 36938856
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgcc-----------------accactagtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||                  ||||||||||||||||||| ||||    
T  36939040 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 36938942  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    || |||   | ||||  || || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  36938941 tagtttcgaggggtaaatatttacatagaaatcggcgtcttttaattctataatcactttaacatttaggtcataaagcctatatg 36938856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 36426912 - 36427101
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacca-----------------ctagtgcccccactatatctt 159  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||                 |||||||||||||||| ||||    
T  36426912 gtgatcaaatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccaataatgttgtgctcccactagtgcccccactat-tctt 36427010  T
Q  160 taatttacggaggtactta-atttc-atagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    || || | || ||||  || ||||| |||||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  36427011 tagttaaagg-ggtaaatatatttccatagaaatcgacatcttttaattctatgatcactttagcatttaagtcat-aaacttatatgcttcg 36427101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 39521698 - 39521748
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaattta 127  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  39521698 gtgatcagatatagtgcccccactagttcttaatttttagaaggaaattta 39521748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 13585167 - 13585099
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgctt 248  Q
    ||||||||||||| | ||| ||| ||||||||||||||||| | || |||||||||||| |||||||||    
T  13585167 tttcatagaaatcagaatcatttgattctatgatcactttagctttaaggtcataaaacctatatgctt 13585099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 9182246 - 9182077
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    |||||||||||||||||||||||||||||||||| |  || ||| |||||||||| || ||||||||||||||||||| |||||||||||||| ||||||    
T  9182246 gtgatcagatatagtgcccccactagttcttaatatacaagagg-aatttagttttcccccactagtgcccccactat-tctttaatttacgggggtact 9182149  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttc 249  Q
    || || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  9182148 tactt-catagaaatcaacatcttttaattctatgatcactttaacatttaggtcataaaacctacatgcttc 9182077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 30654159 - 30654326
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||| |||   | ||||      
T  30654159 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactagtgcccccactat-tctttagtttcaaggggtaaa 30654257  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  30654258 tatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatg 30654326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 17972201 - 17972029
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----gtgcccccactatatctttaatttacggag 171  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||     ||||||||||||| |||||| |||   | |    
T  17972201 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgcccccactat-tctttagtttcaaggg 17972103  T
Q  172 gtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    |||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  17972102 gtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatg 17972029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 30649460 - 30649649
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  30649460 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 30649558  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    || ||||  | ||||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  30649559 tagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcg 30649649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 30616213 - 30616376
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    |||||||||| || |||||||| ||  |||||||||  |||||| |||||||||| || |||||||| |||| ||||| |||||||||||| | |||| |    
T  30616213 gtgatcagatgtaatgcccccaataactcttaattt--aaaaggaaatttagttttcccccactagtacccc-actat-tctttaatttactggggtatt 30616308  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    || ||| || ||||||  |||| ||| ||||||||||||||||| ||||||| ||| ||||| ||||||    
T  30616309 tatttt-attgaaatcaacatcgtttgattctatgatcactttagcatttagatcacaaaacctatatg 30616376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 40036209 - 40036141
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgctt 248  Q
    ||||||||||||| ||||| ||| ||| |||||||||||||  ||||| |||||||| |||||||||||    
T  40036209 tttcatagaaatcagcatcatttgattatatgatcactttagaatttatgtcataaaccttatatgctt 40036141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 244
Target Start/End: Complemental strand, 3174187 - 3174037
Alignment:
Q  91 tgcccccactagttcttaatttttaaaaggg-aatttagtttgccaccactagtgcccccactatatctttaatttacggaggtacttaattt-cataga 188  Q
    |||||||||||||||||||| |  ||||||  |||||| |||||| ||||||||||||| ||||| ||||||||||   | |||| || |||| ||||||    
T  3174187 tgcccccactagttcttaatat--aaaaggataatttattttgcctccactagtgcccc-actat-tctttaatttttag-ggtattttattttcataga 3174093  T
Q  189 aatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatat 244  Q
    |||||  ||  ||| |||||||| ||||||||  |||||||||||||||| |||||    
T  3174092 aatcgatattgtttgattctatggtcactttagtatttaggtcataaaacatatat 3174037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 25480250 - 25480210
Alignment:
Q  204 attctatgatcactttaacatttaggtcataaaacttatat 244  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  25480250 attctatgatcactttagcatttaggtcataaaacctatat 25480210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 25487856 - 25487816
Alignment:
Q  204 attctatgatcactttaacatttaggtcataaaacttatat 244  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  25487856 attctatgatcactttagcatttaggtcataaaacctatat 25487816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 37261389 - 37261218
Alignment:
Q  78 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtactt 177  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||  |||||||||||||| |||| |||||| ||||  | ||||  |    
T  37261389 tgatcagatatagtgcccccactagttcttaatttttagaagagaatttattttgctcccactagtgcccccgctat-tctttagtttaaaggggtaaat 37261291  T
Q  178 aatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    | || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  37261290 atttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcg 37261218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 31272042 - 31272215
Alignment:
Q  78 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtactt 177  Q
    |||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||  ||||||||||||||||||| |||||| ||||  | ||||  |    
T  31272042 tgatcagatatagtgcccccactagttcttgatttttagaaggaaatttattttgctcccactagtgcccccactat-tctttagtttaaaggggtaaat 31272140  T
Q  178 aatttcatagaaatcggcatcttt--taattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    | || |||||||||| || |||||  ||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  31272141 atttacatagaaatcagcgtcttttataattctatgatcactttaacatttaggtcataaaacctatatgtttcg 31272215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 19105280 - 19105350
Alignment:
Q  71 gatatagtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||||||    
T  19105280 gatatagtgatcagatatagtgcccccactagttcttaatttttaaaaaggaatttattttacccccacta 19105350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 32222590 - 32222523
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    |||| |||||| |||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  32222590 catataaatcgacatcgttttattctatgatcactttagcatttaggtcataaaacctatatgcttcg 32222523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 33465747 - 33465680
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    |||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  33465747 catagatatcgatatcttttaattctatgatcactttagcatttaggtcataaaacctatatgtttcg 33465680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 33465880 - 33465816
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta 141  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||| || ||||||    
T  33465880 gtgatcagatatagtgcccccactatttcataatttttaaaaaggaatttatttttcccccacta 33465816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 39319071 - 39319122
Alignment:
Q  199 ttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    |||||||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  39319071 ttttaattctatgatcactttagcattgaggtcataaaactgatatgcttcg 39319122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 19105406 - 19105468
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    ||||||||||  |||||||||  ||||||||||||||| ||||||||||||||||| ||||||    
T  19105406 catagaaatcaacatcttttatatctatgatcactttagcatttaggtcataaaacctatatg 19105468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 39318923 - 39318980
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaa-tttttaaaagggaatttagtttgc 133  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||| |||| |||||    
T  39318923 gtgatcagatatagttcccccacttgttcttaattttttaaaagggattttattttgc 39318980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 15134794 - 15134740
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaa 237  Q
    ||||||||||| |||| ||||| |||||| |||||||  ||||||||||||||||    
T  15134794 catagaaatcgacatcgtttaagtctatgctcacttttgcatttaggtcataaaa 15134740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 41815422 - 41815463
Alignment:
Q  208 tatgatcactttaacatttaggtcataaaacttatatgcttc 249  Q
    ||||||||||||| ||||||||||||||||| |||| |||||    
T  41815422 tatgatcactttagcatttaggtcataaaacctataagcttc 41815463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 25853676 - 25853850
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaattta--gtttgccaccactagtgcccccactatatctttaatttacggaggta 174  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||  ||||||||||||||||||| |||||| ||||  | ||||    
T  25853676 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttttgctcccactagtgcccccactat-tctttagtttaaaggggta 25853774  T
Q  175 cttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
       | || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  25853775 aagatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcg 25853850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 10138571 - 10138748
Alignment:
Q  78 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacc-----------------actagtgcccccactatatcttt 160  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||                 ||||||||||||||||| |||||    
T  10138571 tgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccggtaatgttttgctcccactagtgcccccactat-tcttt 10138669  T
Q  161 aatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaact 239  Q
    | ||||  | ||||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10138670 agtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaact 10138748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 47453563 - 47453525
Alignment:
Q  207 ctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  47453563 ctatgatcactttaacatttaggtcataaaacctatatg 47453525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 4239856 - 4239684
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----gtgcccccactatatctttaatttacggag 171  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||     ||||||||||||| |||||| |||   | |    
T  4239856 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgcccccactat-tctttagtttcaaggg 4239758  T
Q  172 gtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    |||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  4239757 gtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatg 4239684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 40127421 - 40127237
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  40127421 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccgctagtgcccccactat-tctt 40127323  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    || ||||  | ||||  || || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40127322 tagtttaaaggggtaaatatttacattgaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatg 40127237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 8320156 - 8319989
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    |||||||||||||||||||||||| |||||||||     || ||||||||||||| || ||||||||||||||||||| |||||||||||| | ||||||    
T  8320156 gtgatcagatatagtgcccccactggttcttaatac---aaggggaatttagtttacccccactagtgcccccactat-tctttaatttacaggggtact 8320061  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttc 249  Q
     |  ||||||||||||  |||  ||||| | ||||||||||||| |||||| |||||||||| |||| |||||    
T  8320060 -agcttcatagaaatcaacataatttaactttatgatcactttagcatttaagtcataaaacctataagcttc 8319989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 248
Target Start/End: Complemental strand, 25369262 - 25369094
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    ||||||||||||||||||||||||||||||||| | |  || ||||||||| ||| || |||||||||||| |||||| |||||||||||| | |||||     
T  25369262 gtgatcagatatagtgcccccactagttcttaa-tatacaaggggaatttaatttacccccactagtgccctcactat-tctttaatttacaggggtac- 25369166  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgctt 248  Q
     |  ||||||||||||  |||| ||| | | ||||||||||||| ||||||||||||||||| |||| ||||    
T  25369165 cagcttcatagaaatcaacatcgtttgactttatgatcactttagcatttaggtcataaaacctataagctt 25369094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 250
Target Start/End: Complemental strand, 23083411 - 23083234
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----gtgcccccactatatctttaatttacggag 171  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||| || |   ||     ||||||||||||| ||| || ||||  | |    
T  23083411 gtgatcagatatagttcccccactatttcttaatttttagaagggaatttatttttccgcagataatgttgtgcccccactat-tctgtagtttaaaggg 23083313  T
Q  172 gtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    |||  ||  | ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  23083312 gtaaatatctacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtaataaaacctatatgtttcg 23083234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 17023623 - 17023692
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||    
T  17023623 tttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcat-aaacctatatgcttcg 17023692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 17554116 - 17554185
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcg 250  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||    
T  17554116 tttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcat-aaacctatatgcttcg 17554185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 38184029 - 38183968
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatat 244  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  38184029 catagaaatcgacatcttttaattctatgatcactttagcatttaggtcataaaacctatat 38183968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 4539975 - 4539858
Alignment:
Q  131 tgccaccactagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggt 230  Q
    |||| |||| |||||||||||||| |  ||||||||  | || | |||||||||||||||||  |||| ||| ||||||||||||| | |||||||||||    
T  4539975 tgcccccaccagtgcccccactattttcttaatttaaaggggaatttaatttcatagaaatcatcatcgtttgattctatgatcacatcaacatttaggt 4539876  T
Q  231 cataaaacttatatgctt 248  Q
    | |||||| |||||||||    
T  4539875 cgtaaaacctatatgctt 4539858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 17023505 - 17023560
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttg 132  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  17023505 gtgatcagatatagtgcccccactagttcataatttttaatagggaatttattttg 17023560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 17553998 - 17554053
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttg 132  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  17553998 gtgatcagatatagtgcccccactagttcataatttttaatagggaatttattttg 17554053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 34117025 - 34117087
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatg 245  Q
    ||||||||||  |||| ||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  34117025 catagaaatcaacatcattttattctatgatcactttagcatttaggtcataaaacctatatg 34117087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 19952762 - 19952829
Alignment:
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttata 243  Q
    ||||||||| |||||||  |||| ||| ||||||||||||| |||||||||| |||||||||| ||||    
T  19952762 ttaatttcaaagaaatcatcatcgtttgattctatgatcacattaacatttaagtcataaaacctata 19952829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 38184120 - 38184073
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatt 125  Q
    |||||||||||||||||||| |||||||| ||| |||||||||| ||||    
T  38184120 gtgatcagatatagtgcccctactagttcgtaa-ttttaaaaggaaatt 38184073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 81653 - 81780
Alignment:
Q  119 gggaatttagtttgccaccactagtgcccccactatatctttaatttac-ggaggtacttaatttcatagaaatcggcatcttttaattctatgatcact 217  Q
    ||||||||||||| || |||||    |||||||||| |||||||||||| || |||||||| || |||||||||| ||||||||||||||||||||||||    
T  81653 gggaatttagtttacccccact----cccccactat-tctttaatttacagggggtacttactt-catagaaatcagcatcttttaattctatgatcact 81746  T
Q  218 ttaacatttaggtcataaaacttatatgcttcgt 251  Q
    ||||||||||||||||||||| ||||||||||||    
T  81747 ttaacatttaggtcataaaacctatatgcttcgt 81780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 15998146 - 15997975
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaattttt-aaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 175  Q
    ||||||||||||| ||||| |||||| ||||||||||| ||||||||||||| | | || ||||||||||||||||||| ||||||| |||| | |||||    
T  15998146 gtgatcagatataatgccctcactagctcttaattttttaaaagggaatttattgttcc-ccactagtgcccccactat-tctttaagttacaggggtac 15998049  T
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttc 249  Q
    |||  ||| ||||  || |||||  ||  |||||||||||||||| ||||||||||||||||| ||||||||||    
T  15998048 ttatcttcgtagacgtcagcatcgattgtttctatgatcactttagcatttaggtcataaaacctatatgcttc 15997975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 16836367 - 16836324
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagg 120  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  16836367 gtgatcagatatagtgcccccactagttcttaatttttagaagg 16836324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 10490784 - 10490852
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgctt 248  Q
    ||||||||||||| |  || ||| ||||||||||||||||| | |  |||||||||||| |||||||||    
T  10490784 tttcatagaaatcagtttcatttgattctatgatcactttagcttcaaggtcataaaacctatatgctt 10490852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 14776891 - 14776963
Alignment:
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgctt 248  Q
    ||||||||||| |||||   ||||||| ||| |||||||||  || ||||||| ||||||||| |||||||||    
T  14776891 ttaatttcataaaaatcattatcttttgattatatgatcacagtagcatttagatcataaaacctatatgctt 14776963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 248
Target Start/End: Original strand, 61861 - 62029
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    ||||||||||||||||||||||||||||||||| | |  || ||||||||| ||| || |||||||||||| |||||| |||||||||||| | |||||     
T  61861 gtgatcagatatagtgcccccactagttcttaa-tatacaaggggaatttaatttacccccactagtgccctcactat-tctttaatttacaggggtac- 61957  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgctt 248  Q
     |  ||||||||||||  |||| ||| | | ||||||||||||| ||||||||||||||||| |||| ||||    
T  61958 cagcttcatagaaatcaacatcgtttgactttatgatcactttagcatttaggtcataaaacctataagctt 62029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 66063 - 66096
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaat 110  Q
    ||||||||||||||||||||||||||||||||||    
T  66063 gtgatcagatatagtgcccccactagttcttaat 66096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 712 - 542
Alignment:
Q  78 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact- 176  Q
    |||||||||||||||||||||||||||| |||| |  ||  ||||||||||||| || |||||||||| |||||||| |||||||||||| | |||||      
T  712 tgatcagatatagtgcccccactagttcataatatacaag-gggaatttagtttacccccactagtgctcccactat-tctttaatttacaggggtacaa 615  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttc 249  Q
    | | |||||| ||||| ||||| ||| | | ||||||||| ||| ||||||||||||||||| |||| |||||    
T  614 ttacttcataaaaatcagcatcatttgactttatgatcacgttagcatttaggtcataaaacatataagcttc 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 49554 - 49381
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacc-actagtgcccccactatatctttaatttacggaggtac 175  Q
    ||||||||||||| | ||||||||||||||||| | |  || ||||||||||||| || || ||||||||||||||||| |||||||||||| | ||||     
T  49554 gtgatcagatatactacccccactagttcttaa-tatacaaggggaatttagtttacccccaactagtgcccccactat-tctttaatttacaggggtag 49457  T
Q  176 t--taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttc 249  Q
    |  ||  ||||||||||||  |||| ||| | | |||| ||| |||| ||||||||||||||||| |||| |||||    
T  49456 tactagcttcatagaaatcaacatcgtttgactttatggtcaatttagcatttaggtcataaaacctataagcttc 49381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 21667959 - 21668013
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaa 237  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||    
T  21667959 catagaaatcgacatcttttaattatatgatcactttagcatttaggtcataaaa 21668013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 21667830 - 21667878
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatt 125  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||    
T  21667830 gtgatcagatattgtgcccccactaattcttaatttttaaaagggaatt 21667878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 10389892 - 10389827
Alignment:
Q  76 agtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta 141  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  |||||| ||| || ||||||    
T  10389892 agtgattagatatagtgccccaactagttcttaatttttaaaagacaatttatttttcccccacta 10389827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 15984856 - 15984909
Alignment:
Q  195 catcttttaattctatgatcactttaacatttaggtcataaaacttatatgctt 248  Q
    |||| ||| ||| ||||| ||||||| ||||||| |||||||||||||||||||    
T  15984856 catcgtttgattttatgaccactttagcatttagttcataaaacttatatgctt 15984909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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