View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16504_low_67 (Length: 247)
Name: NF16504_low_67
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_67 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 32727028 - 32727267
Alignment:
| Q |
1 |
ttattatccatataaaactatttcatgtttgcttatgataaaccttaaatgaataacttatatgtatagtgtaatcagaat----------agtcaatta |
90 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
32727028 |
ttattatccatataaa-ctatttcatgtttgcttatgataaaccttaaatgaataaattataagtatagtgtaatcagaactgccaataacagtcaatta |
32727126 |
T |
|
| Q |
91 |
cataactgcttagttagaaatcgtagaatatgatgtagcgaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcc |
190 |
Q |
| |
|
||| |||||||||||| |||||||| ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32727127 |
catgactgcttagttaaaaatcgtaaaatatgatgtagcaaattgaagagttgcaattgaatgttagtgtaaaataacttttgagtgacaatgcatatcc |
32727226 |
T |
|
| Q |
191 |
cttaatctcgaatcttaagcctaccaacatgaacaatatgc |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32727227 |
cttaatctcgaatcttaaacctaccaacatgaacaatatgc |
32727267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 44187900 - 44188139
Alignment:
| Q |
1 |
ttattatccatataaaactatttcatgtttgcttatgataaaccttaaatgaataacttatatgtatagtgtaatcagaat-----------agtcaatt |
89 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||| |
|
|
| T |
44187900 |
ttattatccatataaa-ctatttcatgtttgcttatgataaaccttaaatgaataaattataagtacagtgtaatcagaactgccaataaacagtcaatt |
44187998 |
T |
|
| Q |
90 |
acataactgcttagttagaaatcgtagaatatgatgtagcgaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatc |
189 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44187999 |
acatgactgcttagttaaaaatcgtaaaatatgatgtagcgaattgaagagttgcaattgaatgttagtgtaaaataacttttgagtgacaatgcatatc |
44188098 |
T |
|
| Q |
190 |
ccttaatctcgaatcttaagcctaccaacatgaacaatatg |
230 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44188099 |
ccttaatctcgaatcttaaacctaccaacatgaacaatatg |
44188139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 6094201 - 6094302
Alignment:
| Q |
130 |
gaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctaccaacatgaacaatat |
229 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6094201 |
gaattgaagagttgcgattgaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctaccaacatgaacaatat |
6094300 |
T |
|
| Q |
230 |
gc |
231 |
Q |
| |
|
|| |
|
|
| T |
6094301 |
gc |
6094302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 43095903 - 43095731
Alignment:
| Q |
1 |
ttattatccatataaaactatttcatgtttgcttatgataaaccttaaatgaataacttatatgtat----agtgtaatcagaa-tagtcaattacataa |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||| |||||||||| || | | || |||||||| |
|
|
| T |
43095903 |
ttattatccatataaaactatttcatgtttgcttatcataaatcttaaaggaataaattatatgtattgtaagtgtaatcataactcgccatttacataa |
43095804 |
T |
|
| Q |
96 |
ctg--cttagtt-agaaatcgtagaatatgatgtagcgaattgaagagttgcgattaaatgttagtgtaaaat |
165 |
Q |
| |
|
|| |||||| | ||| |||| | || |||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43095803 |
ttgtttttagttaaaaaaccgtaaagtacgatgtagcaaattgaagagttgtgattaaatgttagtgtaaaat |
43095731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 13898007 - 13897925
Alignment:
| Q |
117 |
aatatgatgtagcgaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctc |
199 |
Q |
| |
|
|||||||||| || ||||||||||||| |||| || | | |||||||||||| | || ||||||||||||||| ||||||| |
|
|
| T |
13898007 |
aatatgatgtggcaaattgaagagttgtgattggatttcaatgtaaaataactatacattgacaatgcatatcccgtaatctc |
13897925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University