View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_72 (Length: 228)
Name: NF16504_low_72
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 25964035 - 25963844
Alignment:
| Q |
18 |
gatacaagtggttacattcttcggtcacttctatttttcaaactattaccgacttctacatgtcaatgatttaaaatacatagaatcaactcggaaaagg |
117 |
Q |
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| T |
25964035 |
gatacaagtggttacattcttcggtcacttctatttttcaaactattaccgacttctacatgtcaatgatttaaaatacatataatcaattcagaaaagg |
25963936 |
T |
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| Q |
118 |
atcaaagcctcctttaagcatcttttccaaaggccaaaacaaagggtttggcaaattctccaattcaaaccaatcccaaccgtaacacttat |
209 |
Q |
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| T |
25963935 |
atcaaagcctcctttaagcatcttttccaaaggccaaaacaaagggtttggcaaattctccaattcaaaccaatcccaaccataacacttat |
25963844 |
T |
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