View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_76 (Length: 224)
Name: NF16504_low_76
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_76 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 3568889 - 3568754
Alignment:
| Q |
20 |
aatgacaagtattagttctgttctaaaaccaaattgctatataataattggattggagattgtaccagttatacttccgagtgttggttcaattggtttt |
119 |
Q |
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| T |
3568889 |
aatgacaagtattagttctgttctaaaaccaaattgctatataataattggattggagattgtacctgttatacttccgagtgtt---------ggtttt |
3568799 |
T |
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| Q |
120 |
attggctaaaccacgattgaaccagatgacaagtattacaaaagg |
164 |
Q |
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| T |
3568798 |
attggctaaaccacgattgaaccagatgacaagtattacaaaagg |
3568754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 3601890 - 3601760
Alignment:
| Q |
14 |
cataggaatgacaagtattagttctgttctaaaaccaaattgctatataataattggattggagattgtaccagttatacttccgagtgttggttcaatt |
113 |
Q |
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| T |
3601890 |
cataggaatgacaagtattagttctat-----aaccaaattgctatataatgattggattggatattgaaccggttatatctcc----gttgtttcaatt |
3601800 |
T |
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| Q |
114 |
ggttttattggctaaaccacgattgaaccagatgacaagt |
153 |
Q |
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| T |
3601799 |
ggttttatcgactcaaccatgattgaaccagatgacaagt |
3601760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 3590942 - 3590835
Alignment:
| Q |
39 |
gttctaaaaccaaattgctatataataattggattggagattgtaccagttatacttccgagtgttggttcaattggttttattggctaaaccacgattg |
138 |
Q |
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| T |
3590942 |
gttctataaccaaaatgctatataataattggattggagattgaaccggt-------ccgggtgttggttcgattggttttatcggctcaaccatgattg |
3590850 |
T |
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| Q |
139 |
aaccagatgacaagt |
153 |
Q |
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| T |
3590849 |
aaccagatgacaagt |
3590835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 14340770 - 14340643
Alignment:
| Q |
14 |
cataggaatgacaagtattagttctgttctaaaaccaaattgctatataataattggattggagattgtaccagttatacttccgagtgttggttcaatt |
113 |
Q |
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||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||| ||| |||||| ||| |||||||||||| |
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| T |
14340770 |
cataggaatgacaagtattagttctat-----aaccaagttgctatataataattggattggatattgaaccggttatatctcc----gttggttcaatt |
14340680 |
T |
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| Q |
114 |
ggttttattggctaaaccacgattgaaccagatgaca |
150 |
Q |
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| T |
14340679 |
gtttttatcgactcaaccatgattgaaccagatgaca |
14340643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 1409299 - 1409155
Alignment:
| Q |
14 |
cataggaatgacaagtattagttctgttctaaaaccaaattgctatataataattggattggagattgtaccagttatacttccgagtgttggttcaatt |
113 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||| | ||| || |||||| || |||| || ||||||| ||||||||||| |
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| T |
1409299 |
catagtaatgacaagtattagttct-----aaaaccaaattgctatataatagtcggactgaagattgaacg-gttaaacctccgagtcttggttcaatt |
1409206 |
T |
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| Q |
114 |
ggttttattggctaaaccacgattgaaccagatgacaagtattacaaaagg |
164 |
Q |
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| T |
1409205 |
ggttttatcagttgaaccacgattgaaccagatgacaagtattacaaaagg |
1409155 |
T |
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