View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_80 (Length: 214)
Name: NF16504_low_80
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3590923 - 3590836
Alignment:
| Q |
1 |
atataataattggattggagattgaaccggtccgggtgttggttcgattggttttatcggctcaaccatgattgaaccagatgacaag |
88 |
Q |
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| T |
3590923 |
atataataattggattggagattgaaccggtccgggtgttggttcgattggttttatcggctcaaccatgattgaaccagatgacaag |
3590836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 3590807 - 3590726
Alignment:
| Q |
118 |
caattaaaccaataccggttcaacttggttcaatcatactgcaatgtaacaggaaacaaaccaattgccaaacttaagaata |
199 |
Q |
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| T |
3590807 |
caattaaaccaataccggttcaacttagttcaatcatactgcaatgtaacaggaaacaaaccaattgccaaacttaataata |
3590726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 3601732 - 3601658
Alignment:
| Q |
118 |
caattaaaccaataccggttcaacttggttcaatcatactgcaatgtaacaggaaacaaaccaattgccaaactt |
192 |
Q |
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| T |
3601732 |
caattaaaccaataccggttcaacttggttcaatcatactacaatgtaactggaatcaaaccaattgccaaactt |
3601658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 14340606 - 14340532
Alignment:
| Q |
118 |
caattaaaccaataccggttcaacttggttcaatcatactgcaatgtaacaggaaacaaaccaattgccaaactt |
192 |
Q |
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| T |
14340606 |
caattaaaccaataccggttccacttggttcaatcatactacaatataactggaatcaaaccaatcgccaaactt |
14340532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 3568732 - 3568660
Alignment:
| Q |
120 |
attaaaccaataccggttcaacttggttcaatcatactgcaatgtaacaggaaacaaaccaattgccaaactt |
192 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||| | || ||||||||||||||||||| |
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| T |
3568732 |
attaaaccaatagatgttcaacttggtgcaatcatactgcaatgtaaccgtaatcaaaccaattgccaaactt |
3568660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 3601811 - 3601761
Alignment:
| Q |
38 |
gttggttcgattggttttatcggctcaaccatgattgaaccagatgacaag |
88 |
Q |
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|||| ||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3601811 |
gttgtttcaattggttttatcgactcaaccatgattgaaccagatgacaag |
3601761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 14340691 - 14340643
Alignment:
| Q |
38 |
gttggttcgattggttttatcggctcaaccatgattgaaccagatgaca |
86 |
Q |
| |
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|||||||| |||| |||||||| |||||||||||||||||||||||||| |
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| T |
14340691 |
gttggttcaattgtttttatcgactcaaccatgattgaaccagatgaca |
14340643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 3568806 - 3568766
Alignment:
| Q |
48 |
ttggttttatcggctcaaccatgattgaaccagatgacaag |
88 |
Q |
| |
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|||||||||| |||| ||||| ||||||||||||||||||| |
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| T |
3568806 |
ttggttttattggctaaaccacgattgaaccagatgacaag |
3568766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 1409118 - 1409071
Alignment:
| Q |
133 |
cggttcaacttggttcaatcatactgcaatgtaacaggaaacaaacca |
180 |
Q |
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|||||||||||||||||||||||||||||| ||| |||| ||||||| |
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| T |
1409118 |
cggttcaacttggttcaatcatactgcaatataatcggaatcaaacca |
1409071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 1409216 - 1409167
Alignment:
| Q |
39 |
ttggttcgattggttttatcggctcaaccatgattgaaccagatgacaag |
88 |
Q |
| |
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||||||| |||||||||||| | | ||||| ||||||||||||||||||| |
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| T |
1409216 |
ttggttcaattggttttatcagttgaaccacgattgaaccagatgacaag |
1409167 |
T |
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