View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16504_low_82 (Length: 209)

Name: NF16504_low_82
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16504_low_82
NF16504_low_82
[»] chr6 (24 HSPs)
chr6 (4-208)||(22490420-22490624)
chr6 (1-209)||(10583884-10584112)
chr6 (122-209)||(24338776-24338863)
chr6 (126-209)||(13039657-13039740)
chr6 (122-209)||(25477173-25477260)
chr6 (123-209)||(3630192-3630278)
chr6 (1-209)||(13056951-13057180)
chr6 (122-206)||(13870752-13870836)
chr6 (123-209)||(3632266-3632352)
chr6 (131-209)||(12161882-12161960)
chr6 (60-135)||(24338871-24338946)
chr6 (1-87)||(3632406-3632492)
chr6 (125-209)||(20220030-20220114)
chr6 (125-209)||(22114014-22114098)
chr6 (1-67)||(3630354-3630420)
chr6 (1-87)||(13039511-13039597)
chr6 (117-209)||(14466228-14466319)
chr6 (1-90)||(13870818-13870907)
chr6 (119-189)||(25466517-25466587)
chr6 (122-179)||(3028209-3028266)
chr6 (1-40)||(26944928-26944967)
chr6 (1-35)||(12162024-12162058)
chr6 (26-76)||(20219939-20219989)
chr6 (93-130)||(12161982-12162019)
[»] chr7 (13 HSPs)
chr7 (1-207)||(24748348-24748553)
chr7 (1-209)||(39146315-39146522)
chr7 (1-135)||(21677798-21677932)
chr7 (1-209)||(21679759-21679988)
chr7 (123-209)||(44724454-44724540)
chr7 (122-209)||(27832962-27833049)
chr7 (151-209)||(25276044-25276102)
chr7 (122-193)||(22828977-22829048)
chr7 (134-209)||(21677952-21678027)
chr7 (1-67)||(27833125-27833191)
chr7 (124-193)||(20091885-20091954)
chr7 (1-68)||(44724332-44724399)
chr7 (1-65)||(22829105-22829169)
[»] chr4 (12 HSPs)
chr4 (1-209)||(6132649-6132878)
chr4 (62-209)||(2891174-2891321)
chr4 (1-155)||(27498967-27499108)
chr4 (122-209)||(38270314-38270401)
chr4 (123-209)||(3937536-3937622)
chr4 (1-87)||(38270455-38270541)
chr4 (1-65)||(47564500-47564564)
chr4 (122-209)||(18409674-18409760)
chr4 (26-87)||(3937678-3937739)
chr4 (131-191)||(31983877-31983937)
chr4 (1-35)||(2891136-2891170)
chr4 (1-41)||(18537987-18538027)
[»] chr3 (27 HSPs)
chr3 (1-209)||(36011529-36011758)
chr3 (1-209)||(1627009-1627238)
chr3 (122-209)||(28137621-28137708)
chr3 (1-135)||(5927188-5927322)
chr3 (1-209)||(43423789-43423998)
chr3 (124-209)||(28100367-28100452)
chr3 (125-209)||(28102328-28102412)
chr3 (122-209)||(4663763-4663850)
chr3 (122-209)||(53468781-53468868)
chr3 (1-87)||(28102471-28102558)
chr3 (123-209)||(43421741-43421826)
chr3 (145-209)||(28180891-28180955)
chr3 (1-75)||(7754065-7754139)
chr3 (1-121)||(53468890-53469000)
chr3 (1-65)||(28137765-28137829)
chr3 (1-67)||(28100530-28100596)
chr3 (109-208)||(54884000-54884087)
chr3 (1-85)||(8183163-8183247)
chr3 (129-191)||(1673826-1673888)
chr3 (1-87)||(43421883-43421969)
chr3 (122-193)||(562104-562174)
chr3 (81-131)||(7754137-7754187)
chr3 (129-193)||(23633311-23633375)
chr3 (1-40)||(562207-562246)
chr3 (146-209)||(5927090-5927153)
chr3 (1-40)||(13420686-13420725)
chr3 (1-40)||(25635124-25635163)
[»] chr1 (14 HSPs)
chr1 (1-209)||(50248902-50249131)
chr1 (118-209)||(31489775-31489866)
chr1 (122-209)||(18839451-18839538)
chr1 (122-207)||(17323929-17324014)
chr1 (124-209)||(25251605-25251690)
chr1 (125-207)||(17186460-17186542)
chr1 (1-86)||(17323787-17323872)
chr1 (1-65)||(25251749-25251813)
chr1 (122-206)||(25248847-25248931)
chr1 (1-65)||(25248988-25249052)
chr1 (1-82)||(17186605-17186686)
chr1 (5-65)||(31489733-31489793)
chr1 (1-39)||(18839311-18839349)
chr1 (129-191)||(43104030-43104092)
[»] chr2 (14 HSPs)
chr2 (1-135)||(14836973-14837106)
chr2 (1-205)||(34979911-34980136)
chr2 (109-209)||(11739888-11739988)
chr2 (122-209)||(15539803-15539890)
chr2 (109-209)||(38019970-38020070)
chr2 (126-209)||(22163275-22163358)
chr2 (1-87)||(15539947-15540033)
chr2 (125-209)||(3022006-3022090)
chr2 (1-68)||(11740009-11740076)
chr2 (1-65)||(22163419-22163483)
chr2 (1-77)||(3021841-3021917)
chr2 (129-209)||(14837121-14837200)
chr2 (173-209)||(44289396-44289432)
chr2 (1-30)||(38019886-38019915)
[»] chr5 (11 HSPs)
chr5 (26-209)||(10474651-10474856)
chr5 (16-209)||(17072619-17072834)
chr5 (2-209)||(2723698-2723918)
chr5 (1-209)||(24126581-24126807)
chr5 (123-209)||(39398320-39398405)
chr5 (122-209)||(20042914-20043001)
chr5 (1-209)||(20044759-20044961)
chr5 (1-65)||(695633-695697)
chr5 (122-209)||(34530994-34531080)
chr5 (126-209)||(695758-695840)
chr5 (1-87)||(20042772-20042858)
[»] chr8 (11 HSPs)
chr8 (126-209)||(33541716-33541799)
chr8 (126-209)||(27107225-27107308)
chr8 (122-209)||(14477196-14477283)
chr8 (1-193)||(15186054-15186245)
chr8 (1-135)||(26774980-26775114)
chr8 (1-87)||(27107367-27107453)
chr8 (1-65)||(33541860-33541924)
chr8 (122-209)||(25952441-25952528)
chr8 (146-209)||(5372505-5372568)
chr8 (150-205)||(15949338-15949393)
chr8 (122-167)||(26775122-26775167)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 22490420 - 22490624
Alignment:
Q  4 tgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttatttgag 103  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| | |||| |||||||| ||||||||| ||||||||||| |||||||||||||    
T  22490420 tgaaagtgcctcaaaattgaagaaattagaattctgaaagctgaaaatcgatggccgattttcagggcacggtggccgattttgacctgttttatttgag 22490519  T
Q  104 ctttaggttcggcaaaaatcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattct 203  Q
    ||| |||||||||| ||||||||||| |||||||| |||| ||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  22490520 cttcaggttcggcataaatcggtggctgattttgatagcagaaaataaaacagaaacgtattttcgggtctagatttgttccagttttattgaggattct 22490619  T
Q  204 tttac 208  Q
    |||||    
T  22490620 tttac 22490624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 10583884 - 10584112
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||  |||||   ||||||| ||| | ||| ||||||||||| ||||||||||    
T  10583884 ttgtgaaagtgccttaaaattgaagaaattggaattctggaagctgaaaaccggtggtccattttcagggcgcagtggccgattttgacctgttttattt 10583983  T
Q  101 gagctttaggttcggcaaaaa--------------------tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagattt 180  Q
    |||||| ||||||||||||||                    |||||||||||||||||||||| |||||||||||  ||| |||||||||||||||||||    
T  10583984 gagcttcaggttcggcaaaaatcggtgccgatttggagcattcggtggccgattttgacagcagaaaataaaacagtaacatattttcgggcctagattt 10584083  T
Q  181 gttctagttttattgaggattcttttact 209  Q
    |||| ||||||||||||||||||||||||    
T  10584084 gttccagttttattgaggattcttttact 10584112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 24338863 - 24338776
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  24338863 tcggtggccgattttgacaccaaaaaataaaacataaacgtattttcgggcctagatttgttccagttttattgaagattcttttact 24338776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 13039657 - 13039740
Alignment:
Q  126 tggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  13039657 tggccgattttgacaacagaaaataaaacataaacgtattttcggacctagatttgttccagttttattgaggattcttttact 13039740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 25477173 - 25477260
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25477173 tcggtggccgattttgacatcagaaaataaaacagaaacatattttcgggcctagatttgttccagttttattgaggattcttttact 25477260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 3630278 - 3630192
Alignment:
Q  123 cggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  3630278 cggtggtcgattttgacagcagaaaataaaacagaaacgtatttttgggcctagatttgttccagttttattgaggattcttttact 3630192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 13056951 - 13057180
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||| ||||| |||||||||   | |  | |||    
T  13056951 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcagaaaattggtggccgattttcagggctcggtggccgattttgcactctggttttt 13057050  T
Q  101 gagctttaggttcggcaaaaatcggtggccga---------------------ttttgacagcataaaataaaacataaacgtattttcgggcctagatt 179  Q
       || | ||||||||||||||||||||||||                     |||||| || | ||||||||||| |||||||||||||||||||||||    
T  13057051 tgtctgttggttcggcaaaaatcggtggccgatttatggatttcgatggccaattttgatagtagaaaataaaacagaaacgtattttcgggcctagatt 13057150  T
Q  180 tgttctagttttattgaggattcttttact 209  Q
    ||||| | ||||||||||||||||||||||    
T  13057151 tgttccaattttattgaggattcttttact 13057180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 13870836 - 13870752
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattctttt 206  Q
    ||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13870836 tcggtggccgattttgacagcaggaaataaaatagaaacgtattttcgggcctagatttgttccagttttattgaggattctttt 13870752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 3632352 - 3632266
Alignment:
Q  123 cggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  3632352 cggtgaccgattttgacagcagaaaataaaatagaaacgtattttcgggcctagatttgttccagttttattgaggattcgtttact 3632266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 12161960 - 12161882
Alignment:
Q  131 gattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12161960 gattttgacagcagaaaataaaacagaaacatattttcgggcctagatttgttccagttttattgaggattcttttact 12161882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 24338946 - 24338871
Alignment:
Q  60 gattttcaaggcacggtgaccgattttgacatgttttatttgagctttaggttcggcaaaaatcggtggccgattt 135  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  24338946 gattttcagggcacggtggccgattttgacctgttttatttgagcttcaggttcggcaaaaatcggtggccgattt 24338871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3632492 - 3632406
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttg 87  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| | || | ||||||||| |||||||| |||||||||    
T  3632492 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcgatgcccgattttcaaagcacggtggccgattttg 3632406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 20220030 - 20220114
Alignment:
Q  125 gtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||| ||||||||||| ||||| ||||||    
T  20220030 gtggccgattttgacagcagaaaataaaacaaaaacatattttcgggtctagatttgttccagttttattgatgattcctttact 20220114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 22114014 - 22114098
Alignment:
Q  125 gtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||| ||||||||||| ||||| ||||||    
T  22114014 gtggccgattttgacagcagaaaataaaacaaaaacatattttcgggtctagatttgttccagttttattgatgattcctttact 22114098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3630420 - 3630354
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttca 67  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||||||    
T  3630420 ttgtgaaagtgcctcaaaattgaagaaattggaattctagaagctgaaaatcggtggccgattttca 3630354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13039511 - 13039597
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttg 87  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| |||||  |||||| |||||||| ||| ||||| |||||||||    
T  13039511 ttgtgaaagtgcctcaaaattgaagaaattgaaattctggaagcagaaaaccggtggccgattttcagggctcggtggccgattttg 13039597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 14466228 - 14466319
Alignment:
Q  117 aaaaatcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||  |||| ||||| |||||||  |||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  14466228 aaaaatcaatggctgatttcgacagcaggaaataaaacagaaacgtcttttcgg-cctagatttgttccagttttattgaggattcttttact 14466319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 13870907 - 13870818
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgaca 90  Q
    |||||||||||||| ||||||||||||||||||||| || |||| |||||| |||||  |||||||| ||  ||||| ||||||||||||    
T  13870907 ttgtgaaagtgccttaaaattgaagaaattggaattttggaagcagaaaatcggtggtcgattttcagggttcggtggccgattttgaca 13870818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 25466587 - 25466517
Alignment:
Q  119 aaatcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagtt 189  Q
    |||||||| |||||||||   |||| ||||||||||||||||||||||||||||  |||||||||| ||||    
T  25466587 aaatcggttgccgattttactagcagaaaataaaacataaacgtattttcgggctcagatttgttccagtt 25466517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 3028266 - 3028209
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatt 179  Q
    |||||||| || ||||||||||  | |||||||||||||||||||||| |||||||||    
T  3028266 tcggtggctgaatttgacagcaggatataaaacataaacgtattttcgagcctagatt 3028209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 26944928 - 26944967
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctga 40  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  26944928 ttgtgaaagtgactcaaaattgaagaaattggagttctga 26944967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12162058 - 12162024
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaat 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  12162058 ttgtgaaagtgcctcaaaattaaagaaattggaat 12162024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 20219939 - 20219989
Alignment:
Q  26 aaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggt 76  Q
    ||||||||||| || ||||||||||| |||||| |||||||| ||||||||    
T  20219939 aaattggaattatggaagctgaaaatcggtggccgattttcagggcacggt 20219989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 12162019 - 12161982
Alignment:
Q  93 ttttatttgagctttaggttcggcaaaaatcggtggcc 130  Q
    |||||||||||||| || ||||||||||||||||||||    
T  12162019 ttttatttgagcttcagattcggcaaaaatcggtggcc 12161982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 24748348 - 24748553
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    ||||||||||| |||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  24748348 ttgtgaaagtgactcaaaattgaaaaaattagaattctggaagctgaaaatcggtggctgattttcagggcacggtgaccgattttgacctgttttattt 24748447  T
Q  101 gagctttaggttcggcaaaaatcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggat 200  Q
    |||||| |||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||| |||    
T  24748448 gagcttcaggttcggcaaagatcggtggccaattttgacagcagaaaataaaacagaaacgtattttcggccctagatttgttccagttttattga-gat 24748546  T
Q  201 tctttta 207  Q
    |||||||    
T  24748547 tctttta 24748553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 39146522 - 39146315
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    ||||||||||| |||||||||||||||||||||||| || |||| |||||  |||||  |||||||| ||  ||||| ||||||||||| |||| | |||    
T  39146522 ttgtgaaagtgactcaaaattgaagaaattggaattttggaagcagaaaaccggtggtcgattttcagggttcggtggccgattttgac-tgttgttttt 39146424  T
Q  101 gagctttaggttcggcaaaaatcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggat 200  Q
       || | |||| |||||||| ||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||||||||| | |||||||||||||    
T  39146423 tgtctgttggtttggcaaaaaacggtggccgattttgacagcagaaaataaaacagaaacgtattttcagacctagatttgttccaattttattgaggat 39146324  T
Q  201 tcttttact 209  Q
    |||||||||    
T  39146323 tcttttact 39146315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 21677798 - 21677932
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |||||||| ||||| ||| | |||||| || ||||||||||    
T  21677798 ttgtgaaagtgcctcaaaattgaagaaattggaatcctggaagctgaaaatcggtggccgattttcagggcacagtggctgattttaacctgttttattt 21677897  T
Q  101 gagctttaggttcggcaaaaatcggtggccgattt 135  Q
    |||||| ||||||||||||||||||||||| ||||    
T  21677898 gagcttcaggttcggcaaaaatcggtggccaattt 21677932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 21679759 - 21679988
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||| || |||||| |||||  | |||| |||| ||||||||||| ||||||||||    
T  21679759 ttgtgaaagtgcctcaaaaattaagaaattggaattctggaagctgaacatcggtggccgatttgtagggcatggtggccgattttgacctgttttattt 21679858  T
Q  101 gagctttaggttcggcaaaaa---------------------tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatt 179  Q
    |||||| |||||||| |||||                     || ||||||||||||||||||| ||||||||| | |||||||||||||||||||||||    
T  21679859 gagcttcaggttcggaaaaaattggtggccgattttgagcattcagtggccgattttgacagcagaaaataaaatagaaacgtattttcgggcctagatt 21679958  T
Q  180 tgttctagttttattgaggattcttttact 209  Q
    ||||| ||||| ||||||||||||||||||    
T  21679959 tgttccagtttaattgaggattcttttact 21679988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 44724454 - 44724540
Alignment:
Q  123 cggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||| |||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44724454 cggtggctgattttgatagcagaaaataaaacagaaacgtattttcggacctagatttgttctagttttattgaggattcttttact 44724540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 27833049 - 27832962
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  27833049 tcggtggccaattttgacagcagaaaataaaacagaaatgtattttcgggcctagatttgttccagttttattgatgattcttttact 27832962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 25276044 - 25276102
Alignment:
Q  151 aaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25276044 aaacataaacgtattttcgggcctagatttgttccagttttattgaggattcttttact 25276102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 22829048 - 22828977
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttat 193  Q
    ||||||||||||||| ||||||  |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  22829048 tcggtggccgattttaacagcaggaaataaaacagaaacgtattttcgggcctagatttgttccagttttat 22828977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 21677952 - 21678027
Alignment:
Q  134 tttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||| ||||||||||| |||  ||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  21677952 tttgacagcagaaaataaaacaaaaaaatattttcgggcttagatttgtttcagttttattgaggattcttttact 21678027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27833191 - 27833125
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttca 67  Q
    |||||||||||||||||||||||||||||| |||||||| |||| |||||| |||||| ||||||||    
T  27833191 ttgtgaaagtgcctcaaaattgaagaaattagaattctggaagcagaaaatcggtggccgattttca 27833125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 20091954 - 20091885
Alignment:
Q  124 ggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttat 193  Q
    ||||||||||||||||||||  |||||||||| |||||||||||| ||||||||||||||| | ||||||    
T  20091954 ggtggccgattttgacagcaggaaataaaacagaaacgtattttcaggcctagatttgttccaattttat 20091885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 44724332 - 44724399
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaa 68  Q
    ||||||| |||||||||||||||| |||||| ||||||| ||||||||||| |||||| |||||||||    
T  44724332 ttgtgaacgtgcctcaaaattgaaaaaattgaaattctggaagctgaaaatcggtggccgattttcaa 44724399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22829169 - 22829105
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgatttt 65  Q
    ||||||||||| ||||||||||||||||||||||||||| |||  ||||||  ||||| ||||||    
T  22829169 ttgtgaaagtgactcaaaattgaagaaattggaattctggaagtagaaaatcagtggccgatttt 22829105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 6132649 - 6132878
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||    
T  6132649 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggtggctgattttcagggtacggtgaccgattttgacatgttttattt 6132748  T
Q  101 gagctttaggttcggcaaaaatc---------------------ggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatt 179  Q
    |||||||||||||||||||||||                     |||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  6132749 gagctttaggttcggcaaaaatcggtggccgatttggagcatttggtggccgattttgacagcataaaataaaacataaacgtattttcatgcctagatt 6132848  T
Q  180 tgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||||||||||||||||||    
T  6132849 tgttctagttttattgaggattcttttact 6132878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 62 - 209
Target Start/End: Original strand, 2891174 - 2891321
Alignment:
Q  62 ttttcaaggcacggtgaccgattttgacatgttttatttgagctttaggttcggcaaaaatcggtggccgattttgacagcataaaataaaacataaacg 161  Q
    |||||| ||||||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  2891174 ttttcagggcacggtggccgattttgacctattttatttgagcttcaggttcggcaaaaatcggtggccgattttgacagcagaaaataaaacagaaacg 2891273  T
Q  162 tattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||  ||| |||||||||||| ||||||||||||||||||||||||    
T  2891274 tatttatgggactagatttgttccagttttattgaggattcttttact 2891321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 27498967 - 27499108
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||             |||||| |||| |||| ||||||||||| ||||||||||    
T  27498967 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaa-------------ttttcagggcagggtggccgattttgacctgttttattt 27499053  T
Q  101 gagctttaggttcggcaaaaatcggtggccgattttgacagcataaaataaaaca 155  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  27499054 gagcttcaggttcggcaaaaatcggtggccgattttgacagcagaaaataaaaca 27499108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 38270401 - 38270314
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38270401 tcggtggccgattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttccagttttattgaggattcttttact 38270314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 3937622 - 3937536
Alignment:
Q  123 cggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||||||||||||  |||||||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  3937622 cggtggccgattttgacagcaggaaataaaacagaaacgtattttcgggcctagattttttccagttttatttaggattcttttact 3937536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 38270541 - 38270455
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttg 87  Q
    ||||||||||||||||||||||||||||||| |||||||  ||| |||||| |||||| ||||||||| ||||| |  |||||||||    
T  38270541 ttgtgaaagtgcctcaaaattgaagaaattgaaattctggtagcagaaaatcggtggccgattttcaaagcacgatagccgattttg 38270455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47564500 - 47564564
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgatttt 65  Q
    |||||||||||||||||||||||||||||| |||||||| |||| |||||| |||||| ||||||    
T  47564500 ttgtgaaagtgcctcaaaattgaagaaattagaattctggaagcagaaaatcggtggccgatttt 47564564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 18409760 - 18409674
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||| | |||||||| | ||||||||||| | || ||||||||||||||||||||||| |||||| || ||||||||||||||    
T  18409760 tcggtggccaaatttgacagtagaaaataaaacagacacatattttcgggcctagatttgttccagtttt-tttaggattcttttact 18409674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 3937739 - 3937678
Alignment:
Q  26 aaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttg 87  Q
    ||||||||||||||||||| |||||| |||||| |||||||| ||| ||||| |||||||||    
T  3937739 aaattggaattctgaaagcagaaaatcggtggccgattttcagggctcggtggccgattttg 3937678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 31983937 - 31983877
Alignment:
Q  131 gattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagtttt 191  Q
    ||||||| ||||| |||||||||||||||| |||||| |||| ||||||||||| ||||||    
T  31983937 gattttgccagcagaaaataaaacataaacatatttttgggcttagatttgttccagtttt 31983877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2891136 - 2891170
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2891136 ttgtgaaagtgcctcaaaattgaagaaattggaat 2891170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18538027 - 18537987
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaa 41  Q
    ||||||||||| ||||||||||||||||||| | |||||||    
T  18538027 ttgtgaaagtgactcaaaattgaagaaattgaagttctgaa 18537987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 36011529 - 36011758
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    |||||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||  ||||||||||||||||| ||||||||||| ||||||||||    
T  36011529 ttgtgaaagtgcctcaaaattgaagaaattggaaatctggaaggtgaaaatcggtggccaattttcaaggcacggtggccgattttgacctgttttattt 36011628  T
Q  101 gagctttaggttcggcaaaaatcggtggc---------------------cgattttgacagcataaaataaaacataaacgtattttcgggcctagatt 179  Q
    |||||| ||||||||||||||||||||||                     ||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  36011629 gagcttcaggttcggcaaaaatcggtggccgatttggagcattaggtggtcgattttgacaacataaaataaaacagaaacgtattttcgggcctagatt 36011728  T
Q  180 tgttctagttttattgaggattcttttact 209  Q
    ||||| ||||||||||||||||||||||||    
T  36011729 tgttccagttttattgaggattcttttact 36011758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1627238 - 1627009
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| | ||| ||| ||||||||||| ||||||||||    
T  1627238 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggtggccgattttcaggacacagtggccgattttgacctgttttattt 1627139  T
Q  101 gagctttaggttcggcaaaaatcggtggccgat---------------------tttgacagcataaaataaaacataaacgtattttcgggcctagatt 179  Q
    |||||| ||||||||||||||||||||||||||                     |||||||||| ||||||||||| ||||||||||||| |||||||||    
T  1627138 gagcttcaggttcggcaaaaatcggtggccgatttggagcattcggtggcagactttgacagcaaaaaataaaacagaaacgtattttcgagcctagatt 1627039  T
Q  180 tgttctagttttattgaggattcttttact 209  Q
    ||||| ||||||||||| ||||||||||||    
T  1627038 tgttccagttttattgatgattcttttact 1627009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 28137708 - 28137621
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28137708 tcggtggccgattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttccagttttattgaggattcttttact 28137621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 5927322 - 5927188
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    |||||||||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||||  |||||||| ||||||||||| ||||||||||    
T  5927322 ttgtgaaagtgccttaaaattgaagaaattggaattttggaagctgaaaatcggtggctgattttcagagcacggtggccgattttgacctgttttattt 5927223  T
Q  101 gagctttaggttcggcaaaaatcggtggccgattt 135  Q
    ||||||  |||||| ||   |||| ||||||||||    
T  5927222 gagcttctggttcgacatttatcgatggccgattt 5927188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 43423998 - 43423789
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    |||||||||||||||||||||||||||||||||||||||  ||  |||||  |||||| ||| | ||   ||||||| |||||||||   | | || |||    
T  43423998 ttgtgaaagtgcctcaaaattgaagaaattggaattctggtagtagaaaaccggtggccgatatccagaccacggtggccgattttggactctgtttttt 43423899  T
Q  101 gagctttaggttcggcaaaaatcggtggccgatttt-gacagcataaaataaaacataaacgtattttc-gggcctagatttgttctagttttattgagg 198  Q
    |    |||| |||||||||||||||||||||||||| ||||||| ||||||||| | |||||||||||  |||||||||||||||| |||||||||||||    
T  43423898 gtttgttag-ttcggcaaaaatcggtggccgatttttgacagcaaaaaataaaatagaaacgtattttttgggcctagatttgttccagttttattgagg 43423800  T
Q  199 attcttttact 209  Q
    | |||||||||    
T  43423799 actcttttact 43423789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 28100452 - 28100367
Alignment:
Q  124 ggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  28100452 ggtggccgattttgacagcagaaaataaaacactaacgtattttcgggcctggatttgttccagttttatagaggattcttttact 28100367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 28102412 - 28102328
Alignment:
Q  125 gtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  28102412 gtggccgattttgacagcagaaaataaaacactaacgtattttcgggcctggatttgttccagttttatagaggattcttttact 28102328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 4663763 - 4663850
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||| |||| | ||||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  4663763 tcggtggccgatttttacagtagaaaataaaacagaaacgtattttcaggcttagatttgttctagttttattgaagattcttttact 4663850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 53468868 - 53468781
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||| ||| || ||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  53468868 tcggtggccgattttaacaacagaaaataaaacagaaacatattttcgggcctagatttgttccatttttattgaggattcttttact 53468781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 28102558 - 28102471
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaatt-ggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttg 87  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||| || |||||||||||||||  ||||| |||||||||    
T  28102558 ttgtgaaagtgcctcaaaattgaataaatttggaattctgaaagcagaaaatcgggggctgattttcaaggttcggtggccgattttg 28102471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 43421826 - 43421741
Alignment:
Q  123 cggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||||||||| ||||||||| | || |||||||| |||||||||||||||| |||||||||||||| | |||||||    
T  43421826 cggtggccgattttgacagcagaaaataaaatagaa-cgtatttttgggcctagatttgttccagttttattgaggacttttttact 43421741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 28180891 - 28180955
Alignment:
Q  145 aaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  28180891 aaaataaaatagaaacgtattttcgggcctcgatttgttccagttttattgaggattcttttact 28180955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7754065 - 7754139
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacgg 75  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| | |||| |||||||| |||||||    
T  7754065 ttgtgaaagtggctcaaaattgaagaaattggaattctggaagctaaaaatcgctggccgattttcagggcacgg 7754139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 53469000 - 53468890
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    |||||||||||||||||||||||||||||| |||||||  ||||          |||| |||||||| ||||||||| |||||||||||   ||||||||    
T  53469000 ttgtgaaagtgcctcaaaattgaagaaattagaattctataagc----------tggccgattttcagggcacggtggccgattttgaccatttttattt 53468911  T
Q  101 gagctttaggttcggcaaaaa 121  Q
    |||||| ||||||||||||||    
T  53468910 gagcttcaggttcggcaaaaa 53468890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 28137829 - 28137765
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgatttt 65  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||| |||||| ||||||    
T  28137829 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagtagaaaatcggtggccgatttt 28137765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 28100596 - 28100530
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttca 67  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||| | |||| ||||||||    
T  28100596 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagtagaaaatcgatggccgattttca 28100530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 54884000 - 54884087
Alignment:
Q  109 ggttcggcaaaaatcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttac 208  Q
    ||||||||||||||||||||||||||||||||||| |||            |||||||||||||||| |||||||| | |||||||||||||||||||||    
T  54884000 ggttcggcaaaaatcggtggccgattttgacagcagaaa------------cgtattttcgggcctaaatttgttccaattttattgaggattcttttac 54884087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 8183247 - 8183163
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattt 85  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| ||||||  |||   ||||||||  |||||||| |||||||    
T  8183247 ttgtgaaagtgcctcaaaattgaagaaattgaaattctgatagcagaaaatcagtgatcgattttcagagcacggtggccgattt 8183163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 1673826 - 1673888
Alignment:
Q  129 ccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagtttt 191  Q
    ||||||||| || || ||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  1673826 ccgattttgccaccagaaaataaaacagaaatgtattttcgggcttagatttgttctagtttt 1673888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 43421969 - 43421883
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttg 87  Q
    ||||||||||||||||||||||||||||||||||||| |  ||| ||||||   |||| |||||||||   |||||| |||||||||    
T  43421969 ttgtgaaagtgcctcaaaattgaagaaattggaattcaggtagcagaaaataaatggccgattttcaaactacggtggccgattttg 43421883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 562174 - 562104
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttat 193  Q
    ||||||||||| ||||| ||||  |||||||||| ||||||||||||||||| |||||||||| | ||||||    
T  562174 tcggtggccgaatttgagagcaggaaataaaacagaaacgtattttcgggcc-agatttgttccatttttat 562104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 7754187 - 7754137
Alignment:
Q  81 gattttgacatgttttatttgagctttaggttcggcaaaaatcggtggccg 131  Q
    ||||||||| |||||||||||||||| | ||||||||||||||| ||||||    
T  7754187 gattttgacctgttttatttgagcttcaagttcggcaaaaatcgatggccg 7754137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 23633311 - 23633375
Alignment:
Q  129 ccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttat 193  Q
    |||| |||| ||||| |||||| |||| ||||||||||||| |||||||||||||| | ||||||    
T  23633311 ccgaatttgccagcagaaaatataacagaaacgtattttcgagcctagatttgttccaattttat 23633375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 562246 - 562207
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctga 40  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  562246 ttgtgaaagtgactcaaaattgaagaaattggagttctga 562207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 5927153 - 5927090
Alignment:
Q  146 aaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||| |||| ||||||  ||||||||||||||| |  |||||||| ||||||||||||    
T  5927153 aaataaaacaaaaacatattttacggcctagatttgttccaagtttattgaagattcttttact 5927090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13420725 - 13420686
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctga 40  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  13420725 ttgtgaaagtgactcaaaattgaagaaattggagttctga 13420686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25635124 - 25635163
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctga 40  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  25635124 ttgtgaaagtgactcaaaattgaagaaattggagttctga 25635163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 50249131 - 50248902
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||| ||||||||| ||||||||||| ||||||||||    
T  50249131 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggccgctgattttcagggcacggtggccgattttgacctgttttattt 50249032  T
Q  101 gagctttaggttcggcaaaaatcggtggccg---------------------attttgacagcataaaataaaacataaacgtattttcgggcctagatt 179  Q
    |||||| ||||||||||||||||||||||||                     |||||||||||| ||| ||||||| |||| ||||| ||||||||||||    
T  50249031 gagcttcaggttcggcaaaaatcggtggccgatttggagcattcggtggccgattttgacagcagaaattaaaacagaaacatatttacgggcctagatt 50248932  T
Q  180 tgttctagttttattgaggattcttttact 209  Q
    ||||| ||||||||||||||||||||||||    
T  50248931 tgttccagttttattgaggattcttttact 50248902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 31489775 - 31489866
Alignment:
Q  118 aaaatcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31489775 aaaattgggggccgattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 31489866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 18839451 - 18839538
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18839451 tcggtggccgattttgacagcagaaaattaaacagaaacgtattttcgggcctagatttgttatagttttattgaggattcttttact 18839538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 17323929 - 17324014
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattctttta 207  Q
    ||||||||| |||||||||||| ||| ||||||| ||||||| ||||| ||||| |||||||| ||||||||||||||||||||||    
T  17323929 tcggtggccaattttgacagcagaaattaaaacagaaacgtactttcgtgcctaaatttgttccagttttattgaggattctttta 17324014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 25251690 - 25251605
Alignment:
Q  124 ggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||| |||||| || |||||| | |||||||||||||||||||||||||||| ||||||||||| |||| |||||||    
T  25251690 ggtggccgattttaacagcagaatataaaaaagaaacgtattttcgggcctagatttgttccagttttattgaagatttttttact 25251605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 17186542 - 17186460
Alignment:
Q  125 gtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattctttta 207  Q
    |||||||||||||||||||  |||||||| | ||||||||||| || |||| |||||||| ||||||||||||||||||||||    
T  17186542 gtggccgattttgacagcaggaaataaaaaagaaacgtatttttggacctaaatttgttccagttttattgaggattctttta 17186460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 17323787 - 17323872
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgatttt 86  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||| |||| | |||||||| ||| ||||| ||||||||    
T  17323787 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagtagaaaatcggtgaccgattttcagggctcggtggccgatttt 17323872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25251813 - 25251749
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgatttt 65  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||    
T  25251813 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcagaaaatcggtggccgatttt 25251749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 25248931 - 25248847
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattctttt 206  Q
    ||||| |||||||||  |||||  |||||||||| |||| || |||||||||||||||||||| |||||||||||||||| ||||    
T  25248931 tcggtagccgatttttgcagcaggaaataaaacagaaacatactttcgggcctagatttgttcaagttttattgaggattttttt 25248847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25249052 - 25248988
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgatttt 65  Q
    |||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||    
T  25249052 ttgtgatagtgcctcaaaattgaagaaattggaattctggaagcagaaaatcggtggccgatttt 25248988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 17186686 - 17186605
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccga 82  Q
    ||||||||| | ||||||||||||||||||| || |||| |||| |||||| ||||||||||||||| ||| ||||| ||||    
T  17186686 ttgtgaaagcgactcaaaattgaagaaattgaaaatctggaagcagaaaatcggtggctgattttcagggctcggtggccga 17186605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 31489733 - 31489793
Alignment:
Q  5 gaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgatttt 65  Q
    |||||||||| |||||||||||||||||||||||| |||| ||||||||| ||| ||||||    
T  31489733 gaaagtgccttaaaattgaagaaattggaattctggaagcagaaaattgggggccgatttt 31489793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18839311 - 18839349
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctg 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  18839311 ttgtgaaagtgcctcaaaattgaataaattggaattctg 18839349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 43104030 - 43104092
Alignment:
Q  129 ccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagtttt 191  Q
    ||||||||| || |||||||||||||| |||| |||||| |||| ||||||||||| ||||||    
T  43104030 ccgattttgccaacataaaataaaacagaaacatatttttgggcttagatttgttccagtttt 43104092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 14836973 - 14837106
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||    
T  14836973 ttgtgaaagtgcctcaaaattgaagaaattagaattctggaagctgaaaattggtggccg-ttttcagggcacggtggccgattttgacatgttttattt 14837071  T
Q  101 gagctttaggttcggcaaaaatcggtggccgattt 135  Q
    |||||| |||||||||||||||||| |||||||||    
T  14837072 gagcttcaggttcggcaaaaatcggcggccgattt 14837106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 34980136 - 34979911
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    |||||||| ||||||||||||||||||||| |||||||  ||||||||||| |||||| |||||| | | ||||||| ||||||||||| || |||||||    
T  34980136 ttgtgaaaatgcctcaaaattgaagaaattagaattctagaagctgaaaatcggtggccgatttttaggacacggtggccgattttgacctgctttattt 34980037  T
Q  101 gagctttaggttcggcaaaaa---------------------tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatt 179  Q
    |||||||||||| ||||||||                     ||||||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  34980036 gagctttaggtttggcaaaaatcggggcccaatttggagcattcggtggccgattttcacagcagaaaataaaacagaaacgtatcttcgggcctagatt 34979937  T
Q  180 tgttctagttttattgaggattcttt 205  Q
    ||||| ||||||||||||||||||||    
T  34979936 tgttccagttttattgaggattcttt 34979911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 11739988 - 11739888
Alignment:
Q  109 ggttcggcaaaaatcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttac 208  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||||||    
T  11739988 ggttcggcaaaaatcggtggccgattttgacagcagaaaataaaacagaaacgtattttcgtgtctagatttgttccagttttattgaggattcttttac 11739889  T
Q  209 t 209  Q
    |    
T  11739888 t 11739888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 15539890 - 15539803
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  15539890 tcggtggccgattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttccagttttattgaggattgttttact 15539803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 38019970 - 38020070
Alignment:
Q  109 ggttcggcaaaaatcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttac 208  Q
    ||||| ||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||    
T  38019970 ggttcagcaaaaatcagtggccgattttgacagtagaaaataaaacagaaacgtattttcgggcctagatttattccagttttattgaggatttttttac 38020069  T
Q  209 t 209  Q
    |    
T  38020070 t 38020070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 22163358 - 22163275
Alignment:
Q  126 tggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||| ||||||||||||  |||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22163358 tggccaattttgacagcaggaaataaaacagaaatgtattttcgggcctagatttgttccagttttattgaggattcttttact 22163275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 15540033 - 15539947
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttg 87  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||| |||||||||||| ||||| |||||||||    
T  15540033 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcagaaaatcgatggccgattttcaaggctcggtggccgattttg 15539947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 3022006 - 3022090
Alignment:
Q  125 gtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||||| ||||  |||||||||| |||||||||||||||||||||||||||  |||||||||||||||||| |||||    
T  3022006 gtggccgattttgatagcaggaaataaaacagaaacgtattttcgggcctagatttgttggagttttattgaggattctcttact 3022090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 11740076 - 11740009
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  11740076 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagttgaaaatcggtggccgattttcaa 11740009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22163483 - 22163419
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgatttt 65  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||    
T  22163483 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggtggccgatttt 22163419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3021841 - 3021917
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtg 77  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | ||||  ||||| |||||||| ||| |||||    
T  3021841 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcaggaaatccgtggccgattttcagggctcggtg 3021917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 14837121 - 14837200
Alignment:
Q  129 ccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||| |||| |||| | ||||||||||||| || |||||||| || ||||||||||||||||||||||||    
T  14837121 ccgattttgacagcagaaaaaaaaa-acaaacgtattttcgagcttagatttgctccagttttattgaggattcttttact 14837200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 44289432 - 44289396
Alignment:
Q  173 ctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||| ||||||||||||||||||||||||    
T  44289432 ctagatttgttccagttttattgaggattcttttact 44289396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38019886 - 38019915
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaatt 30  Q
    ||||||||||||||||||||||||||||||    
T  38019886 ttgtgaaagtgcctcaaaattgaagaaatt 38019915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 10474856 - 10474651
Alignment:
Q  26 aaattggaattctgaaagctgaaaa-ttggtggctgattttcaaggcacggtgaccgattttgacatgttttatttgagctttaggttcggcaaaaatcg 124  Q
    |||||||||||||| |||||||||| |||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||||    
T  10474856 aaattggaattctggaagctgaaaaattggtggccgattttcagggcacggtggccgattttgacctgttttatttgagcttcaggttcggaaaaaatcg 10474757  T
Q  125 gtggccg---------------------attttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattct 203  Q
    |||||||                     |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  10474756 gtggccgatttggagcattcggtggccgattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttccagttttattgaggattct 10474657  T
Q  204 tttact 209  Q
     |||||    
T  10474656 cttact 10474651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 17072619 - 17072834
Alignment:
Q  16 aaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttatttgagctttaggttcgg 115  Q
    |||||| |||||||||||||| |||||||||||||| |||||| ||||||||||| || ||| ||||||||||| |||||||||||||||| | ||||||    
T  17072619 aaaattaaagaaattggaattttgaaagctgaaaatcggtggccgattttcaaggtacagtggccgattttgacctgttttatttgagcttcaagttcgg 17072718  T
Q  116 caaaaa----------------------tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttat 193  Q
    ||||||                      |||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| | ||||||    
T  17072719 caaaaaatcggtggccgatttggagcattcggtggccgattttgacagtagaaaataaaacataaacgtattttcaggcctagatttgttccatttttat 17072818  T
Q  194 tgaggattcttttact 209  Q
    ||||||||||||||||    
T  17072819 tgaggattcttttact 17072834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 2723698 - 2723918
Alignment:
Q  2 tgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttatttg 101  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||        |||| ||||||||| ||||||||||| |||||||||||    
T  2723698 tgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggt--------ttcagggcacggtggccgattttgacctgttttatttg 2723789  T
Q  102 agctttaggttcggcaaaaatcggtg---------------------gccgattttgacagcataaaataaaacataaacgtattttcgggcctagattt 180  Q
    ||||| ||||||||||||||||||||                     ||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  2723790 agcttcaggttcggcaaaaatcggtggccaatttggagcatttggtggccgattttgacagcaggaaataaaacagaaacgtattttcgggcctagattt 2723889  T
Q  181 gttctagttttattgaggattcttttact 209  Q
    |||| |  |||||||||||||||||||||    
T  2723890 gttccaagtttattgaggattcttttact 2723918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24126581 - 24126807
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgttttattt 100  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||| | || ||   |||||||| ||||||||||| |||||| |||    
T  24126581 ttgtgaaagtgtctcaaaattgaagaaattggaattctagaagctgaaaattggtggccggttgtc---gcacggtggccgattttgacctgttttgttt 24126677  T
Q  101 gagctttaggttcggcaaaaa---------------------tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatt 179  Q
    |||||| || |||||||||||                     |||||||||||||||||||||| ||||||||||||||| ||||||||| | |||||||    
T  24126678 gagcttcagattcggcaaaaatcggtggccgatttggagtattcggtggccgattttgacagcagaaaataaaacataaatgtattttcgagtctagatt 24126777  T
Q  180 tgttctagttttattgaggattcttttact 209  Q
    ||||| ||||||||||||||||||||||||    
T  24126778 tgttccagttttattgaggattcttttact 24126807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 39398405 - 39398320
Alignment:
Q  123 cggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39398405 cggtggccgattt-gacagcagaaaataaaacataaacgtattttcgggcctagatttgttccagttttattgaggattcttttact 39398320  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 20042914 - 20043001
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||||| | ||  |||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  20042914 tcggtggccgattttgagatcaggaaataaaacagaaacgtattttcgggcctagatttattccagttttattgaggattcttttact 20043001  T

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Target: chr5; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 20044759 - 20044961
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgaca---tgtttta 97  Q
    ||||||||||| ||||||||||||||||||||||||||| |||| |||||| ||||||       |  ||| ||||| |||| |||| ||   ||||||     
T  20044759 ttgtgaaagtgactcaaaattgaagaaattggaattctggaagcagaaaatcggtggc-------ccgggctcggtggccgaatttg-cagtttgttttt 20044850  T
Q  98 tttgagctttaggttcggcaaaaatcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgag 197  Q
    ||||  |||| |||||| ||   ||||||||||||||||||||| |   ||||||||| ||| ||||||||||| |||||||||||| ||||||||||||    
T  20044851 tttggccttt-ggttcgacatttatcggtggccgattttgacagtagggaataaaacagaaatgtattttcgggtctagatttgttccagttttattgag 20044949  T
Q  198 gattcttttact 209  Q
    ||||||||||||    
T  20044950 gattcttttact 20044961  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 695633 - 695697
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgatttt 65  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||    
T  695633 ttgtgaaagtgcctcaaaattgaagaaattgaaattctggaagctgaaaattggtggccgatttt 695697  T

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Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 34531080 - 34530994
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||| || || || | |||||||||||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||    
T  34531080 tcggtggccgaattcgatagtagaaaataaaacataaacgtattttcaggcctagatttgttccagtttt-tttaggattcttttact 34530994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 695758 - 695840
Alignment:
Q  126 tggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||| || || |||||| ||||||||||||||| |  |||||||||||||| |||||||||||| |||||||||||    
T  695758 tggccgattttgccaacagaaaatataacataaacgtattt-caagcctagatttgttccagttttattgagaattcttttact 695840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 20042772 - 20042858
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttg 87  Q
    |||||||||||  | |||||||||||||||||||||||| |||  |||||||| |||| |||||||| ||||||||| |||| ||||    
T  20042772 ttgtgaaagtgatttaaaattgaagaaattggaattctggaagaagaaaattgatggccgattttcagggcacggtggccgaatttg 20042858  T

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Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 33541799 - 33541716
Alignment:
Q  126 tggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33541799 tggccgattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttcgagttttattgaggattcttttact 33541716  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 27107308 - 27107225
Alignment:
Q  126 tggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27107308 tggccgattttgacagcagaaaataaaatagaaacgtattttcgggcctagatttgttccagttttattgaggattcttttact 27107225  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 14477196 - 14477283
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    ||||||||||||||||||||||  |||||||| | ||||||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  14477196 tcggtggccgattttgacagcaagaaataaaatagaaacgtattttcgggtctagatttattccagttttattgaggattcttttact 14477283  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 15186245 - 15186054
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgac-atgttttatt 99  Q
    ||||||||||| ||||||||||||||||| |||||| || ||||  ||||| ||| |  |||||||| ||| ||||| |||| ||  || ||| ||| ||    
T  15186245 ttgtgaaagtgactcaaaattgaagaaataggaattatggaagcaaaaaatcggtcgtcgattttcagggctcggtggccgaattgcactatgattt-tt 15186147  T
Q  100 tgagctttaggttcggcaaaaatcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttat 193  Q
    | |||||| ||||||  ||   ||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||| | ||||||    
T  15186146 tcagcttt-ggttcgtgaattttcggtggccgattttgacagcaggaaataaaacagaaacgtattttcgggcctagatttgttccaattttat 15186054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 26774980 - 26775114
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttgacatgt-tttatt 99  Q
    |||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||| ||||||||  ||||| ||||||||||||  || | ||| ||    
T  26774980 ttgtgaaagtgcctcaaaattgaagaaattggaattctggtagcagaaaatcggtggccgattttcagagcacgttgaccgattttggaatctgtttttt 26775079  T
Q  100 tgagctttaggttcggcaaaaatcggtggccgattt 135  Q
    ||  ||||| ||||||||||| |||||| |||||||    
T  26775080 tggccttta-gttcggcaaaagtcggtgcccgattt 26775114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 27107453 - 27107367
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgattttcaaggcacggtgaccgattttg 87  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||| ||||||||  ||| |||| |||||||||    
T  27107453 ttgtgaaagtgcctcaaaattgaagaaattagaattctggaagctgaaaatcgatggccgattttcagagcatggtggccgattttg 27107367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33541924 - 33541860
Alignment:
Q  1 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagctgaaaattggtggctgatttt 65  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| ||||||    
T  33541924 ttgtgaaagtgcctcaaaattaaagaaattggaattctggaagctgaaaatcggtggccgatttt 33541860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 25952441 - 25952528
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||| ||| |||||||||| ||  |||||||  | |||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  25952441 tcgggggctgattttgacaacaggaaataaacaagaaacgtattttcgggcttagatttgttccagttttattgaggattcttttact 25952528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 5372568 - 5372505
Alignment:
Q  146 aaataaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttttact 209  Q
    |||||||| | ||||||||||||||| |||||||| |||||||| |||||||||||||||||||    
T  5372568 aaataaaatagaaacgtattttcgggtctagattttttctagttctattgaggattcttttact 5372505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 15949338 - 15949393
Alignment:
Q  150 aaaacataaacgtattttcgggcctagatttgttctagttttattgaggattcttt 205  Q
    |||||||||| |||||||||||||||||||||||| | |||| || ||||| ||||    
T  15949338 aaaacataaatgtattttcgggcctagatttgttccactttttttaaggatgcttt 15949393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 26775122 - 26775167
Alignment:
Q  122 tcggtggccgattttgacagcataaaataaaacataaacgtatttt 167  Q
    ||||||||||||||||||||||  ||||| |||| |||||||||||    
T  26775122 tcggtggccgattttgacagcaggaaatagaacagaaacgtatttt 26775167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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