View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16504_low_9 (Length: 535)

Name: NF16504_low_9
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16504_low_9
NF16504_low_9
[»] chr8 (22 HSPs)
chr8 (284-515)||(13148927-13149159)
chr8 (121-258)||(35574575-35574712)
chr8 (287-434)||(29969097-29969245)
chr8 (149-278)||(29969128-29969257)
chr8 (118-383)||(35574619-35574884)
chr8 (149-258)||(6630316-6630426)
chr8 (103-225)||(37010313-37010435)
chr8 (121-220)||(32166608-32166707)
chr8 (175-357)||(32166640-32166819)
chr8 (314-434)||(6803870-6803990)
chr8 (168-243)||(26086801-26086876)
chr8 (104-217)||(7405534-7405647)
chr8 (314-410)||(6630334-6630430)
chr8 (117-225)||(6630507-6630615)
chr8 (168-220)||(29093586-29093638)
chr8 (106-193)||(34695817-34695904)
chr8 (153-258)||(6803876-6803982)
chr8 (309-358)||(7590319-7590368)
chr8 (123-200)||(12736059-12736136)
chr8 (288-340)||(29093670-29093723)
chr8 (310-379)||(37010328-37010397)
chr8 (183-258)||(29093729-29093805)
[»] chr2 (17 HSPs)
chr2 (99-339)||(38576791-38577031)
chr2 (121-259)||(16576251-16576389)
chr2 (117-252)||(16863455-16863591)
chr2 (287-434)||(16576247-16576394)
chr2 (116-244)||(9050073-9050202)
chr2 (291-360)||(16863459-16863529)
chr2 (121-257)||(25606369-25606506)
chr2 (156-231)||(17606589-17606665)
chr2 (168-434)||(9050053-9050320)
chr2 (123-258)||(34176882-34177016)
chr2 (121-215)||(28282653-28282747)
chr2 (105-210)||(13712902-13713007)
chr2 (310-379)||(28282673-28282742)
chr2 (310-358)||(2248940-2248988)
chr2 (156-223)||(13784436-13784504)
chr2 (121-252)||(16576420-16576552)
chr2 (175-258)||(40374043-40374127)
[»] chr7 (12 HSPs)
chr7 (166-339)||(31152754-31152928)
chr7 (168-339)||(31171316-31171487)
chr7 (121-220)||(23944079-23944178)
chr7 (124-220)||(22593545-22593638)
chr7 (121-255)||(34891536-34891671)
chr7 (249-431)||(23944038-23944219)
chr7 (121-278)||(32138802-32138958)
chr7 (310-360)||(3191569-3191619)
chr7 (121-194)||(42012804-42012876)
chr7 (314-360)||(34891560-34891606)
chr7 (151-191)||(33362414-33362454)
chr7 (171-215)||(48097182-48097226)
[»] chr5 (21 HSPs)
chr5 (121-259)||(2243250-2243388)
chr5 (149-387)||(7215272-7215512)
chr5 (102-384)||(22780153-22780435)
chr5 (153-369)||(40483716-40483932)
chr5 (116-193)||(14138543-14138620)
chr5 (287-434)||(17736684-17736830)
chr5 (288-387)||(37077760-37077860)
chr5 (132-258)||(41264387-41264515)
chr5 (285-387)||(973108-973211)
chr5 (153-259)||(5205471-5205578)
chr5 (121-225)||(37077763-37077867)
chr5 (121-242)||(973114-973236)
chr5 (314-387)||(7982229-7982303)
chr5 (114-220)||(39808205-39808311)
chr5 (138-187)||(39730312-39730361)
chr5 (121-232)||(17736714-17736826)
chr5 (227-258)||(39707348-39707379)
chr5 (103-173)||(37077638-37077707)
chr5 (310-431)||(2243248-2243368)
chr5 (175-223)||(17739923-17739971)
chr5 (150-194)||(26105494-26105538)
[»] chr1 (25 HSPs)
chr1 (99-368)||(34601435-34601703)
chr1 (144-246)||(3367808-3367911)
chr1 (99-278)||(38839577-38839753)
chr1 (149-254)||(49897901-49898007)
chr1 (121-219)||(68100-68198)
chr1 (106-223)||(10775005-10775122)
chr1 (117-218)||(35956982-35957083)
chr1 (121-259)||(3232131-3232270)
chr1 (175-383)||(67983-68193)
chr1 (99-154)||(45136757-45136812)
chr1 (311-384)||(3367806-3367879)
chr1 (121-194)||(42819624-42819697)
chr1 (287-387)||(44330462-44330563)
chr1 (121-194)||(46080974-46081047)
chr1 (285-434)||(12144967-12145114)
chr1 (310-349)||(2534429-2534468)
chr1 (285-422)||(24874595-24874734)
chr1 (287-341)||(46080970-46081025)
chr1 (178-259)||(41148570-41148651)
chr1 (106-191)||(3231946-3232031)
chr1 (168-252)||(7104315-7104400)
chr1 (121-186)||(10775166-10775231)
chr1 (121-232)||(24874601-24874714)
chr1 (286-341)||(10775161-10775217)
chr1 (102-257)||(15321025-15321181)
[»] chr6 (9 HSPs)
chr6 (121-247)||(32342603-32342730)
chr6 (104-258)||(20067902-20068057)
chr6 (175-292)||(32047047-32047163)
chr6 (310-431)||(32047197-32047318)
chr6 (125-259)||(32047181-32047316)
chr6 (286-379)||(32342598-32342692)
chr6 (115-164)||(20206484-20206533)
chr6 (115-164)||(22100507-22100556)
chr6 (131-191)||(23577164-23577224)
[»] chr3 (12 HSPs)
chr3 (116-258)||(39341197-39341340)
chr3 (235-413)||(42091740-42091916)
chr3 (105-223)||(13283810-13283928)
chr3 (123-197)||(42091787-42091861)
chr3 (168-279)||(2562971-2563079)
chr3 (111-222)||(48646405-48646515)
chr3 (102-341)||(54437621-54437860)
chr3 (124-255)||(20519233-20519365)
chr3 (106-186)||(21570356-21570436)
chr3 (103-166)||(7641833-7641896)
chr3 (121-203)||(34761943-34762025)
chr3 (235-278)||(46258513-46258554)
[»] chr4 (7 HSPs)
chr4 (168-280)||(22050902-22051013)
chr4 (151-341)||(25062352-25062544)
chr4 (285-366)||(15131571-15131653)
chr4 (121-194)||(15131574-15131647)
chr4 (310-428)||(55897574-55897693)
chr4 (103-225)||(20512795-20512917)
chr4 (124-259)||(25234300-25234436)
[»] scaffold0136 (1 HSPs)
scaffold0136 (154-223)||(36943-37012)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 284 - 515
Target Start/End: Complemental strand, 13149159 - 13148927
Alignment:
Q  284 aggttttttcttacaaccaattaccatttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaat 383  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13149159 aggttttttcttacgaccaattaccatttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccagaat 13149060  T
Q  384 tgaaccctacttgtcactaggggtaaactatccccaatttatcaaggggta-tttatgtctcacaaaaataaattatgttttatgtgggagtggaaagag 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13149059 tgaaccctacttgtcactaggggtaaactatccccaatttatcaaggggtactttatgtctcacaaaaataaattatgttttatgtgggagtggaaagag 13148960  T
Q  483 aaagatgaacgagagttagatgaggtggagcct 515  Q
    |||||||||||||||||||||||||||||||||    
T  13148959 aaagatgaacgagagttagatgaggtggagcct 13148927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 258
Target Start/End: Complemental strand, 35574712 - 35574575
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    |||||||||| |||||  |||| ||||  |||||||||||| |||| |||||| |||||||||||||| ||||| ||||  ||||||||| |||||||||    
T  35574712 ttcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttcgttccaaaatcgaatc 35574613  T
Q  221 ctattgtcattaaaggtaaattacccctaattcatcaa 258  Q
     ||| ||||| |   |||||||||   |||||||||||    
T  35574612 atatcgtcataaggagtaaattacatataattcatcaa 35574575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 434
Target Start/End: Original strand, 29969097 - 29969245
Alignment:
Q  287 ttttttcttacaaccaattaccatttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaattga 386  Q
    ||||||||||||| || |||||||||  | |||| ||||||||| |||||| ||  ||| |||||| ||||||| |  ||||||||| ||||| ||| ||    
T  29969097 ttttttcttacaatcagttaccattttttttcaagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctctttcgttccataatcga 29969196  T
Q  387 accctacttgtcact-aggggtaaactatccccaatttatcaaggggta 434  Q
    |  |||||||||| | ||||||||| ||||| ||||| |||||||||||    
T  29969197 attctacttgtcattaaggggtaaattatccacaattcatcaaggggta 29969245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 29969128 - 29969257
Alignment:
Q  149 caagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaa-aggtaaattaccc 246  Q
    |||||||||||||||| | | || | ||||||||||||||||| |  ||||| ||||||||| |||||||| ||| ||||||||||  ||||||||| ||    
T  29969128 caagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctctttcgttccataatcgaattctacttgtcattaaggggtaaattatcc 29969227  T
Q  247 ctaattcatcaagtggggtaatgtaggtctca 278  Q
      ||||||||||  ||||||||||||||||||    
T  29969228 acaattcatcaa--ggggtaatgtaggtctca 29969257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 383
Target Start/End: Complemental strand, 35574884 - 35574619
Alignment:
Q  118 ttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcga 217  Q
    ||||| ||||||  |||||  |||| |||| ||||||||| ||  |||| ||| ||||||||| ||||| |||| | |||||| ||||||||| ||||||    
T  35574884 ttattattacaacgagttactattttcatctcaagaacattaatttttttcatatctttcattgaacatatgattttaatctctttcgttccaaaatcga 35574785  T
Q  218 atccta-ttgtcattaaaggtaaattacccctaattcatcaagtggggtaatgtaggtctcatcagtaggttttttcttacaaccaattacca-tttcat 315  Q
    ||| || |||||||||  ||||||||||||  ||||||||||   |  ||||| ||  |||||   |||| ||||||||||||  | |||| | ||||||    
T  35574784 atcatagttgtcattagcggtaaattaccctcaattcatcaa--tgaataatggagacctcattgatagggtttttcttacaattagttacgattttcat 35574687  T
Q  316 ctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaat 383  Q
    || || |||||||||||| |||||||  || |||||| |||| || || |||| |||| |||||||||    
T  35574686 cttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttcgttccaaaat 35574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 6630426 - 6630316
Alignment:
Q  149 caagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccc 247  Q
    |||||||||||||||||| ||||| |||||||||||||||| | || ||||| ||| || || |||| ||||||| |||||||||  |||||||||| |     
T  6630426 caagaacatcaaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactct 6630327  T
Q  248 taattcatcaa 258  Q
     ||||||||||    
T  6630326 caattcatcaa 6630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 37010435 - 37010313
Alignment:
Q  103 tcattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcat 202  Q
    ||||||| || || |||||| | | ||| ||||| ||||| |||| ||| |||||||||||| | ||| ||||||||| ||||||||||||| ||||| |    
T  37010435 tcatttttttcatctttattttaaaaattagttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctcct 37010336  T
Q  203 tcgttccagaatcgaatcctatt 225  Q
    || ||||| ||||||||| ||||    
T  37010335 tcattccataatcgaatcatatt 37010313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 32166707 - 32166608
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    ||||||| |||| ||||||||| |||| |||||||||||||||| | |||||| || ||||||||||| ||||  ||||| ||||||  ||||| |||||    
T  32166707 ttcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatc 32166608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 175 - 357
Target Start/End: Complemental strand, 32166819 - 32166640
Alignment:
Q  175 ttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaagtggggtaatgtagg 273  Q
    |||||| |||||||||| |  ||||| ||||||||| ||||||||| || ||||||||| ||||||||||| || ||||||||||   |   |||||| |    
T  32166819 ttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaa--agaaaaatgtatg 32166722  T
Q  274 tctcatcagtaggttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgt 357  Q
     ||||||  |||  |||||||||| | |||||| || ||||||||||| ||||||||| |||||||||| ||| |||||| ||||    
T  32166721 -ctcatcgatag--tttttcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgt 32166640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 434
Target Start/End: Complemental strand, 6803990 - 6803870
Alignment:
Q  314 atctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaattgaaccctacttgtcactaggggtaaacta 413  Q
    ||||||||||||||||| ||||| ||||  || |||||  ||||| | || ||||| |||||| ||||||  || ||||||||||| |||||||||| ||    
T  6803990 atctcaaaaacatcaaacttctttatctttttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaatta 6803891  T
Q  414 tccccaatttatcaaggggta 434  Q
      ||||||| ||||| |||||    
T  6803890 ctcccaattcatcaaagggta 6803870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 26086801 - 26086876
Alignment:
Q  168 catctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatcctattgtcattaaaggtaaatta 243  Q
    |||||| || ||||||||| ||||||   |||| ||||||||| ||| ||||||||||||||||| ||||||||||    
T  26086801 catctcctttattcaacatatgatctttgtctctttcgttccataattgaatcctattgtcattagaggtaaatta 26086876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 7405647 - 7405534
Alignment:
Q  104 cattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcatt 203  Q
    ||||| |||||| |||||||||| ||| |||| | ||||  ||  |||| ||||||||| | | |||||| | |||||||||||||||||  ||||| ||    
T  7405647 catttactttatctttattcttaaaattagttgttatttttatgtcaagcacatcaaacgtcttcatctcctacattcaacatgtgatcttcatctcgtt 7405548  T
Q  204 cgttccagaatcga 217  Q
    ||||||| ||||||    
T  7405547 cgttccataatcga 7405534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 410
Target Start/End: Complemental strand, 6630430 - 6630334
Alignment:
Q  314 atctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaattgaaccctacttgtcactaggggtaaa 410  Q
    ||||||| ||||||||| || |||||||  || |||||| ||||| | || ||||| |||||| ||||||  || ||||||||||| ||||||||||    
T  6630430 atctcaagaacatcaaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaa 6630334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 6630615 - 6630507
Alignment:
Q  117 tttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcg 216  Q
    |||||||||  ||||| ||| ||||| ||||  |||| ||| ||| || | |||||| |||||| |||| |||||||| ||||||||||||| | ||| |    
T  6630615 tttattcttcaaatcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccatctcattcgttctataattg 6630516  T
Q  217 aatcctatt 225  Q
    |||||||||    
T  6630515 aatcctatt 6630507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 29093586 - 29093638
Alignment:
Q  168 catctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    |||||| |||||||||||||||||||| ||||| ||||||||| |||| ||||    
T  29093586 catctccttcattcaacatgtgatctccatctctttcgttccataatcaaatc 29093638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 34695817 - 34695904
Alignment:
Q  106 ttttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatct 193  Q
    ||||||| || |||||||||||||||||||||||||| | |  ||| |  |||||| || | || ||| |||||||||||||||||||    
T  34695817 ttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgtgatct 34695904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 6803982 - 6803876
Alignment:
Q  153 aacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaat 251  Q
    |||||||||||| |  |||| ||||||||| |||||| | || ||||| ||| || || |||| ||||||| |||||||||  |||||||||| || |||    
T  6803982 aacatcaaacttctttatctttttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactcccaat 6803883  T
Q  252 tcatcaa 258  Q
    |||||||    
T  6803882 tcatcaa 6803876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 7590368 - 7590319
Alignment:
Q  309 atttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtg 358  Q
    ||||||| |||| |||||||||||||||||||| ||| ||||| ||||||    
T  7590368 atttcatttcaagaacatcaaatttcttcatcttcttcattcactatgtg 7590319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 12736059 - 12736136
Alignment:
Q  123 cttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctc 200  Q
    |||||||| ||||| ||||| ||||  || |||||||||||| | |||||| ||| ||||||||||||| || |||||    
T  12736059 cttacaattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctc 12736136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 29093670 - 29093723
Alignment:
Q  288 tttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcatc 340  Q
    |||||||||||||||||||||| ||| |||||||||  ||||||||| ||||||    
T  29093670 tttttcttacaaccaattaccattttaatctcaaaagtatcaaattttttcatc 29093723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 37010397 - 37010328
Alignment:
Q  310 tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattcca 379  Q
    ||||||||||||||||||||| || ||||| |  || ||| || ||||||| |||||||| |||||||||    
T  37010397 tttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctccttcattcca 37010328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 29093729 - 29093805
Alignment:
Q  183 acatgtgatctcaatctcattcgttccagaatcgaatcct-attgtcattaaaggtaaattacccctaattcatcaa 258  Q
    |||||||||| | ||||| ||| ||||| |||| |||| | ||||||||||||| ||||||||||| |||| |||||    
T  29093729 acatgtgatccctatctccttccttccaaaatcaaatcttgattgtcattaaagataaattaccccaaatttatcaa 29093805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 99 - 339
Target Start/End: Complemental strand, 38577031 - 38576791
Alignment:
Q  99 aatctcattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatc 198  Q
    |||||||||||||| ||||||||| ||| ||||||||| ||||| ||||  |||||||| ||| || | |||||||||||||||||||||||| || |||    
T  38577031 aatctcattttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatc 38576932  T
Q  199 tcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaagtggggtaatgtaggtctcatc-agtaggttttttctta 296  Q
    || ||||| ||| |||| |||| || |||||||||   |||||||||||| ||||||| ||  ||||||||||||| |||||| |  |||||||||||||    
T  38576931 tctttcgtaccataatcaaatcatatttgtcattaggagtaaattacccc-aattcataaa--ggggtaatgtaggcctcatcgataaggttttttctta 38576835  T
Q  297 caaccaattacca-tttcatctcaaaaacatcaaatttcttcat 339  Q
    ||| || |||||| ||||||||||| |  |||||| ||||||||    
T  38576834 caatcagttaccattttcatctcaatataatcaaacttcttcat 38576791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 16576251 - 16576389
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    |||||||||||| ||| ||||| | || |||||||||||||||| | |||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  16576251 ttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 16576350  T
Q  221 cta-ttgtcattaaaggtaaattacccctaattcatcaag 259  Q
     || || ||||||  ||||||||| ||| |||||||||||    
T  16576351 atacttatcattaggggtaaattaaccc-aattcatcaag 16576389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 117 - 252
Target Start/End: Original strand, 16863455 - 16863591
Alignment:
Q  117 tttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcg 216  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||| || | |||||  || |||||| |||||||||  ||||| ||||||  |||||||    
T  16863455 tttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctccttcgttatagaatcg 16863554  T
Q  217 aatccta-ttgtcattaaaggtaaattacccctaatt 252  Q
    ||||||| |||||||| |  |||||||||||| ||||    
T  16863555 aatcctacttgtcattgagcgtaaattaccccaaatt 16863591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 287 - 434
Target Start/End: Original strand, 16576247 - 16576394
Alignment:
Q  287 ttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaattg 385  Q
    ||||||||||||| ||||||||| |||| |||||| ||||||||| |||||||||| ||| |||||| ||||||| ||  |||| ||| ||||| ||| |    
T  16576247 ttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcg 16576346  T
Q  386 aaccctacttgtcactaggggtaaactatccccaatttatcaaggggta 434  Q
    || | ||||| ||| |||||||||| ||  ||||||| |||||||||||    
T  16576347 aatcatacttatcattaggggtaaatta-acccaattcatcaaggggta 16576394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 244
Target Start/End: Complemental strand, 9050202 - 9050073
Alignment:
Q  116 atttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatc 215  Q
    |||| ||||||| |||||||| ||||| |||   ||||||| ||||||| | ||||||  ||||||||||| ||||||| |||||||||||| || ||||    
T  9050202 attttttcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcattcgttacaaaatc 9050103  T
Q  216 gaatcct-attgtcattaaaggtaaattac 244  Q
    ||||| |  |||||||||| ||||||||||    
T  9050102 gaatcatgcttgtcattaagggtaaattac 9050073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 16863459 - 16863529
Alignment:
Q  291 ttcttacaaccaattaccattt-catctcaaaaacatcaaatttcttcatctacttaattcaatatgtgat 360  Q
    ||||||||| || ||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  16863459 ttcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgat 16863529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 25606369 - 25606506
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    |||||||| |||  |||||||| || | | ||||||||||| || | ||||| ||||||||||||| |||| |  ||||| ||||||||| || ||||||    
T  25606369 ttcttacactcaaatatcattttcaactccagaacatcaaaattcttcatctgtttcattcaacatatgatatacatctccttcgttccataaacgaatc 25606468  T
Q  221 cta-ttgtcattaaaggtaaattacccctaattcatca 257  Q
    ||| |||| ||||| ||||||||||||  |||||||||    
T  25606469 ctacttgttattaagggtaaattaccctcaattcatca 25606506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 17606665 - 17606589
Alignment:
Q  156 atcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcatt 231  Q
    ||||||||| | |||||| ||||||||||||||||| || ||||||||||||| |||||| ||||||| ||||||||    
T  17606665 atcaaacttgttcatctccttcattcaacatgtgatatccatctcattcgttcaagaatcaaatcctacttgtcatt 17606589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 434
Target Start/End: Complemental strand, 9050320 - 9050053
Alignment:
Q  168 catctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatcctatt-gtcattaaaggtaaattacccctaattcatcaagtggggta 266  Q
    ||||||||||||| ||||| |||| |  ||||  || ||| || |||||||||||| | ||||||| |||||||||||||  ||||||||||  | | ||    
T  9050320 catctctttcatttaacatttgatttacatcttctttgtttcataatcgaatcctactagtcattagaggtaaattaccctcaattcatcaa--gagata 9050223  T
Q  267 atgtaggtctcatcagta-ggttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttct 364  Q
    |||| |||||| ||| ||   ||||||||||| | || |||||| |||||| | || |||| |||| |||||||||| | | |||||| || |||| ||     
T  9050222 atgttggtctcgtcaatataattttttcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctcc 9050123  T
Q  365 atctctttcattccaaaattgaaccctacttgtcactaggggtaaactatccccaatttatcaaggggta 434  Q
    ||||| ||| || |||||| ||| | | ||||||| || ||||||| ||  | |||||||||||| ||||    
T  9050122 atctcattcgttacaaaatcgaatcatgcttgtcattaagggtaaattactctcaatttatcaagaggta 9050053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 258
Target Start/End: Original strand, 34176882 - 34177016
Alignment:
Q  123 cttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatcct 222  Q
    |||||||| ||||| ||||| |||| |||||||  ||||||| | |||||  ||||||||||||||||| |  |||   ||| || |||||| ||||| |    
T  34176882 cttacaattagttaccattttcatctcaagaac--caaacttgtacatcttcttcattcaacatgtgatattcatcctcttcatttcagaattgaatctt 34176979  T
Q  223 att-gtcattaaaggtaaattacccctaattcatcaa 258  Q
    ||| || ||||| ||||||||||| ||||||||||||    
T  34176980 atttgttattaagggtaaattacctctaattcatcaa 34177016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 28282653 - 28282747
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatc 215  Q
    |||||||||||   || ||||| |||| | | |||||||||||| |  ||||  ||||||||| |||||||||| ||||||||||||||| ||||    
T  28282653 ttcttacaatcgaataccattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatctcattcgttccataatc 28282747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 13713007 - 13712902
Alignment:
Q  105 attttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattc 204  Q
    ||||| ||||||||||||| ||||||| |||| |||||  |||  || ||  ||||||||||  ||||| |||||| ||||||||||||  ||||| ||     
T  13713007 attttttttatatttattcctacaatcggttaccatttttatcttaaaaatttcaaacttttttatctccttcatttaacatgtgatctacatctctttg 13712908  T
Q  205 gttcca 210  Q
    ||||||    
T  13712907 gttcca 13712902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 28282673 - 28282742
Alignment:
Q  310 tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattcca 379  Q
    ||||||||| | ||||||||| ||||| |||| ||| |||||||||||||| || ||||| ||| |||||    
T  28282673 tttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatctcattcgttcca 28282742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 2248988 - 2248940
Alignment:
Q  310 tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtg 358  Q
    ||||||||||||||||| ||| |||||||||| ||||||| || |||||    
T  2248988 tttcatctcaaaaacattaaacttcttcatcttcttaattgaacatgtg 2248940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 13784436 - 13784504
Alignment:
Q  156 atcaaacttt-tccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta 223  Q
    |||||||||| | |||||| |||||||||||| |||| |  || |||||||||| ||||||||||||||    
T  13784436 atcaaactttcttcatctccttcattcaacatatgatatatatttcattcgttcaagaatcgaatccta 13784504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 252
Target Start/End: Original strand, 16576420 - 16576552
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    |||||||||||| ||||||||| |||  ||| |||| ||||| | | ||| || |||||| ||||||  ||||| ||||  |||||| ||  || |||||    
T  16576420 ttcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatgcaatctccatcttcttcgttacattattgaatc 16576519  T
Q  221 ctatt-gtcattaaaggtaaattacccctaatt 252  Q
     |||| |||||||||| ||||||||||| ||||    
T  16576520 atatttgtcattaaagataaattaccccaaatt 16576552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 40374127 - 40374043
Alignment:
Q  175 ttcattcaacatgtgatctcaatctcattcgttccagaatcgaatcctatt-gtcattaaaggtaaattacccctaattcatcaa 258  Q
    |||||||||||| | ||||| ||||  ||| ||||| ||| ||||| |||| |||||||||| ||||| |||||| |||||||||    
T  40374127 ttcattcaacatattatctccatcttgttcattccataattgaatcatatttgtcattaaagataaatcacccctgattcatcaa 40374043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 166 - 339
Target Start/End: Complemental strand, 31152928 - 31152754
Alignment:
Q  166 tccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaagtgggg 264  Q
    ||||||| |||||||||| |||||||||| ||||| |||||| || |||||||||||| |||| |||| |||||||||||||| ||||||||||||  |     
T  31152928 tccatctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagt--ga 31152831  T
Q  265 taatgtaggtctcatca-gtaggttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcat 339  Q
    ||||||||   ||||||  | ||||||||| ||||||||||||||| |||||||| |||||||||||  ||||||||    
T  31152830 taatgtagacttcatcattttggttttttcatacaaccaattaccattttcatcttaaaaacatcaatcttcttcat 31152754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 168 - 339
Target Start/End: Complemental strand, 31171487 - 31171316
Alignment:
Q  168 catctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaagtggggta 266  Q
    ||||| |||||||||| ||||||| || ||||| |||||| || |||||||||||| |||| |||| |||||||||||||| ||||||||||||  | ||    
T  31171487 catctgtttcattcaaaatgtgatttccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagt--gata 31171390  T
Q  267 atgtaggtctcatcagtaggttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcat 339  Q
    ||||||   |||||| |  | |||||||||||||||||||||| |||||||| |||||||||||  ||||||||    
T  31171389 atgtagacttcatcattttggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcat 31171316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 23944079 - 23944178
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    |||||||||| ||||  ||||| ||||  ||||||||||||||| | | |||||||||||||||||||||| || ||||| ||  |||||||||||||||    
T  23944079 ttcttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctcctttattccagaatcgaatc 23944178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 22593638 - 22593545
Alignment:
Q  124 ttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    ||||||||| || |||||| |||| ||||||||||||||||   ||||| |||||||||||||||||| || ||||| ||||||| | |||||||||    
T  22593638 ttacaatcaattgtcattttcatctcaagaacatcaaactt---catctatttcattcaacatgtgatatctatctccttcgttctaaaatcgaatc 22593545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 255
Target Start/End: Original strand, 34891536 - 34891671
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    ||||||| || |||||||||||  ||| ||||||||||||| || | |||||| |||||||||||||||||||| || |  ||||||  | ||| |||||    
T  34891536 ttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccatttgcttcgttataaaattgaatc 34891635  T
Q  221 cta-ttgtcattaaaggtaaattacccctaattcat 255  Q
     || |||| ||| |  ||||||||||||||||||||    
T  34891636 ttatttgttattgatagtaaattacccctaattcat 34891671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 431
Target Start/End: Original strand, 23944038 - 23944219
Alignment:
Q  249 aattcatcaagtggggtaatgtaggtctcatca-gtaggttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcatctactta 346  Q
    |||||||||||  ||||||||||||||||| ||  || ||||||||||||||  | || ||| |||||||| || ||||||||| |||||| |||  ||     
T  23944038 aattcatcaag--gggtaatgtaggtctcaccatttaagttttttcttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctttc 23944135  T
Q  347 attcaatatgtgatttctatctctttcattccaaaattgaaccctacttgtcactaggggtaaactatccccaatttatcaaggg 431  Q
    |||||| |||||||||| ||||| || |||||| ||| ||| | ||||| |||  |||||||| | ||||| |||| ||||||||    
T  23944136 attcaacatgtgatttccatctcctttattccagaatcgaatcatacttatcatcaggggtaatc-atcccaaattcatcaaggg 23944219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 278
Target Start/End: Complemental strand, 32138958 - 32138802
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    |||||| ||||| ||| ||||| ||||  |||||||||||| || | |||||| ||| |||||||||| ||||| ||||  ||||||| |||| ||||||    
T  32138958 ttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccatcttcttcgttctagaagcgaatc 32138859  T
Q  221 cta-ttgtcattaaaggtaaattacccctaattcatcaagtggggtaatgtaggtctca 278  Q
     || | ||||||||   ||||||| || ||||||||   | ||||||||||||||||||    
T  32138858 atactcgtcattaagaataaattatccttaattcat--tgaggggtaatgtaggtctca 32138802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 3191619 - 3191569
Alignment:
Q  310 tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgat 360  Q
    ||||||||||||||||||||| |||||||||| ||| |||||| |||||||    
T  3191619 tttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgtgat 3191569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 42012804 - 42012876
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctc 194  Q
    |||||| ||||||||| || ||  ||| |||||||||||||||||| ||||| ||| |||||||||||||||||    
T  42012804 ttcttagaatcagttaccacttttatcacaagaacatcaaactttttcatctattt-attcaacatgtgatctc 42012876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 34891560 - 34891606
Alignment:
Q  314 atctcaaaaacatcaaatttcttcatctacttaattcaatatgtgat 360  Q
    ||||||| |||||||||||||||||||| ||| |||||| |||||||    
T  34891560 atctcaagaacatcaaatttcttcatctccttcattcaacatgtgat 34891606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 33362454 - 33362414
Alignment:
Q  151 agaacatcaaacttttccatctctttcattcaacatgtgat 191  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  33362454 agaacatcaaactttttaatctccttcattcaacatgtgat 33362414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 48097226 - 48097182
Alignment:
Q  171 ctctttcattcaacatgtgatctcaatctcattcgttccagaatc 215  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||    
T  48097226 ctcttttattcaacatgtgattttaatctcattcgttccataatc 48097182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 121 - 259
Target Start/End: Complemental strand, 2243388 - 2243250
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    |||||||||| ||||| ||||| |||| |||||||||||||||| | ||| || |||||||||||||||||||| ||||  ||||||| ||||||||||     
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcgaatt 2243289  T
Q  221 cta-ttgtcattaaaggtaaattacccctaattcatcaag 259  Q
     || ||||||||| |||||||||||||| |||||||||||    
T  2243288 ttacttgtcattagaggtaaattacccc-aattcatcaag 2243250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 149 - 387
Target Start/End: Complemental strand, 7215512 - 7215272
Alignment:
Q  149 caagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccc 247  Q
    ||||||||| |||||||| ||| |  |||||||||||||||||||  ||||| |||||||||||| || ||| || |||| |||| | ||||||||  |     
T  7215512 caagaacattaaactttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaaccgcatcatagttgttattagatgtaaattattct 7215413  T
Q  248 taattcatcaag-tggggtaatgtaggtctcatcagtaggttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcatctactt 345  Q
     |||||||||   | |||||||| | | ||||    | ||||||||||||||| ||| ||||| ||||||||||| ||||||||| |||||  ||| |||    
T  7215412 caattcatcattattgggtaatgcatgactcactgctgggttttttcttacaatcaactaccattttcatctcaagaacatcaaacttctt-ttcttctt 7215314  T
Q  346 aattcaatatgtgatttctatctctttcattccaaaattgaa 387  Q
     ||| |||||||||| || |||| |||||||| |||||||||    
T  7215313 cattgaatatgtgatctccatctttttcattctaaaattgaa 7215272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 102 - 384
Target Start/End: Complemental strand, 22780435 - 22780153
Alignment:
Q  102 ctcattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctca 201  Q
    ||||||||||| || |||| | || |||| ||| | ||||| |||| ||| ||||  |||||| | ||| || |||||||||||||||||||  ||| |     
T  22780435 ctcattttcttaatctttactatttcaatgagtcaccattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatccct 22780336  T
Q  202 ttcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaagtggggtaatgtaggtctcatcagtaggttttttcttacaac 300  Q
    ||||||  |||||| |||| || |||||||||  | ||||||||| | ||||||||  || |||||||| | |  ||||  ||||||||||| ||||||     
T  22780335 ttcgttttagaatcaaatcatagttgtcattagggataaattacctccaattcatc--gttgggtaatgcatgcttcattggtaggttttttattacaat 22780238  T
Q  301 caattacca-tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaatt 384  Q
    || |||||| ||| || |||| ||||||||| || ||||||||| | |||||| ||||||| ||||| | |||| ||| ||||||    
T  22780237 cagttaccatttttatttcaataacatcaaactttttcatctacgtcattcaacatgtgatctctatgtttttcgttctaaaatt 22780153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 153 - 369
Target Start/End: Original strand, 40483716 - 40483932
Alignment:
Q  153 aacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaat 251  Q
    |||||||||||| | ||||||  ||||||||||||||||||  ||||||||||||||| ||||||||| || || |||||   ||||| ||||||  |||    
T  40483716 aacatcaaacttcttcatctcactcattcaacatgtgatcttcatctcattcgttccaaaatcgaatcatacttatcattgggggtaatttaccctcaat 40483815  T
Q  252 tcatcaagtggggtaatgtaggtctcatcagtaggttttttcttacaaccaattacc-atttcatctcaaaaacatcaaatttcttcatctacttaattc 350  Q
    |||||||  | | |||  |||| ||||||  ||||||||||| ||||| ||||| || | || || |||| |||||| || |||||||||| ||| | ||    
T  40483816 tcatcaa--gagataacataggcctcatcgataggttttttcgtacaatcaattcccaaatttatatcaagaacatccaacttcttcatcttctttactc 40483913  T
Q  351 aatatgtgatttctatctc 369  Q
    || ||||||| || |||||    
T  40483914 aacatgtgatctccatctc 40483932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 14138543 - 14138620
Alignment:
Q  116 atttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatct 193  Q
    ||||||||||||||||| ||| ||||| ||||  ||||| ||||||||||  ||||||||||||||||||||| ||||    
T  14138543 atttattcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatct 14138620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 434
Target Start/End: Complemental strand, 17736830 - 17736684
Alignment:
Q  287 ttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaattg 385  Q
    ||||||||||||||||||||||| ||||||||||| || || ||| |||||||||| ||| | |||| ||||||| |||||||  ||| ||| | ||| |    
T  17736830 ttttttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgatctctatcttcttcgttctagaatcg 17736731  T
Q  386 aaccctacttgtcactaggggtaaactatccccaatttatcaaggggta 434  Q
    || | ||||||||| ||||||  || |||||  |||||||| |||||||    
T  17736730 aatcgtacttgtcattagggg--aattatccaaaatttatcgaggggta 17736684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 288 - 387
Target Start/End: Original strand, 37077760 - 37077860
Alignment:
Q  288 tttttcttacaaccaattaccattt-catctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaattga 386  Q
    |||||||||||| || ||| ||||| |||||||||||||||||||||||| || |  || |||||| ||||||| ||||| || |||||| |||||||||    
T  37077760 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctctatatcattcatttcaaaattga 37077859  T
Q  387 a 387  Q
    |    
T  37077860 a 37077860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 132 - 258
Target Start/End: Original strand, 41264387 - 41264515
Alignment:
Q  132 agttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgtt-ccagaatcgaatcct-attgtca 229  Q
    |||| |||||| |||| ||||||||| |||||||| ||| |  |||||||||||||||||||  ||||| ||||||  || ||||||||| | ||||| |    
T  41264387 agttgtcattttcatctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatctctttcgttatcataatcgaatcataattgtta 41264486  T
Q  230 ttaaaggtaaattacccctaattcatcaa 258  Q
    ||| |||||||||| || |||||||||||    
T  41264487 ttagaggtaaattaaccttaattcatcaa 41264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 387
Target Start/End: Original strand, 973108 - 973211
Alignment:
Q  285 ggttttttcttacaaccaattaccatttc-atctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaat 383  Q
    |||||||||||||||  | ||| |||||  ||||||||||||| |||||||||||||| ||| |||||| ||||||| |  ||||| |||||| ||||||    
T  973108 ggttttttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattcattacaaaat 973207  T
Q  384 tgaa 387  Q
    ||||    
T  973208 tgaa 973211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 5205578 - 5205471
Alignment:
Q  153 aacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatcct-attgtcattaaaggtaaattacccctaat 251  Q
    ||||||||||||||  ||||| || ||| ||||||||||||| ||||  ||||||  | ||||||||| | ||||||||||| |||||| |||||| |||    
T  5205578 aacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcgttttataatcgaatcatgattgtcattaagggtaaaatacccccaat 5205479  T
Q  252 tcatcaag 259  Q
    ||||||||    
T  5205478 tcatcaag 5205471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 225
Target Start/End: Original strand, 37077763 - 37077867
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    |||||||||||||||| ||||| |||| ||| ||||||||| || |  || | ||||||||||||||||||||| || |||||| || || ||| |||||    
T  37077763 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctctatatcattcatttcaaaattgaatc 37077862  T
Q  221 ctatt 225  Q
     ||||    
T  37077863 ttatt 37077867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 973114 - 973236
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    |||||||||| |||||||||||  ||| ||| ||||| ||| || | |||||| || ||||||||||||||||  ||||||||| || || ||| |||||    
T  973114 ttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattcattacaaaattgaatc 973213  T
Q  221 cta-ttgtcattaaaggtaaatt 242  Q
     || || |||||||| |||||||    
T  973214 atatttatcattaaaagtaaatt 973236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 7982303 - 7982229
Alignment:
Q  314 atctcaaaaacatcaaa-tttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaattgaa 387  Q
    |||||||||||||  || ||||||||||| ||| |||||| |||||||||||||||| |||||| || |||||||    
T  7982303 atctcaaaaacatttaagtttcttcatctccttcattcaacatgtgatttctatctccttcatttcagaattgaa 7982229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 39808311 - 39808205
Alignment:
Q  114 atatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaa 213  Q
    ||||||||||||| ||  ||||||||||| || |  |||| |||||||||||| |||||| |||||| ||||| ||||||   |||| ||| ||| ||||    
T  39808311 atatttattcttaaaacaagttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacatatgatctatgtctctttcattctagaa 39808212  T
Q  214 tcgaatc 220  Q
    |||||||    
T  39808211 tcgaatc 39808205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 39730361 - 39730312
Alignment:
Q  138 catttacatcccaagaacatcaaacttttccatctctttcattcaacatg 187  Q
    ||||| |||| |||||||||||||||||| ||||||||||||| ||||||    
T  39730361 cattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 17736826 - 17736714
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    ||||||||| || ||| ||||| |||| ||| || || |||||| | |||||  |||| ||||||||||||||| ||||  ||||||| |||||||||||    
T  17736826 ttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgatctctatcttcttcgttctagaatcgaatc 17736727  T
Q  221 cta-ttgtcatta 232  Q
     || |||||||||    
T  17736726 gtacttgtcatta 17736714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 258
Target Start/End: Original strand, 39707348 - 39707379
Alignment:
Q  227 tcattaaaggtaaattacccctaattcatcaa 258  Q
    ||||||||||||||||||||||||||||||||    
T  39707348 tcattaaaggtaaattacccctaattcatcaa 39707379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 37077638 - 37077707
Alignment:
Q  103 tcattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctc 173  Q
    |||||||||  || |||||||||| ||||||||||||||| |||| ||||||||| |||||| | ||||||    
T  37077638 tcattttctccatctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttcatctc 37077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 431
Target Start/End: Complemental strand, 2243368 - 2243248
Alignment:
Q  310 tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaattgaaccctacttgtcactaggggtaa 409  Q
    ||||||||||| ||||||||| |||||||| | ||| |||||| ||||||| || ||||  ||| ||| | ||| |||   ||||||||| ||| |||||    
T  2243368 tttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcgaattttacttgtcattagaggtaa 2243269  T
Q  410 actatccccaatttatcaaggg 431  Q
    | || |||||||| ||||||||    
T  2243268 atta-ccccaattcatcaaggg 2243248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 17739923 - 17739971
Alignment:
Q  175 ttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta 223  Q
    |||||| |||||||||| |  ||||| ||||||||||||||||||||||    
T  17739923 ttcatttaacatgtgattttcatctccttcgttccagaatcgaatccta 17739971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 26105538 - 26105494
Alignment:
Q  150 aagaacatcaaacttttccatctctttcattcaacatgtgatctc 194  Q
    ||||||||||||||| |||||||| ||||||  ||||||||||||    
T  26105538 aagaacatcaaacttctccatctccttcatttcacatgtgatctc 26105494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 99 - 368
Target Start/End: Complemental strand, 34601703 - 34601435
Alignment:
Q  99 aatctcattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatc 198  Q
    |||||||||||||| || ||||||||||| || |||||| |||| |||| ||| |||||||||| ||| |||||  || |||||||||||||| |  |||    
T  34601703 aatctcattttcttcatctttattcttacgattagttattattttcatctcaaaaacatcaaacgttttcatctactt-attcaacatgtgatattcatc 34601605  T
Q  199 tcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaagtggggtaatgtaggtctca-tcagtaggttttttctta 296  Q
    || ||| ||  | ||||||||| || ||||||||| ||  |||||||| |||||| |||||  ||||| |||||||||||| | |  |||||||||| ||    
T  34601604 tccttccttataaaatcgaatcatagttgtcattagagacaaattacctctaatttatcaa--ggggt-atgtaggtctcactgataaggttttttccta 34601508  T
Q  297 caaccaattacca-tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatct 368  Q
    ||| ||||||| | ||| |||| || ||||||||| ||| |||||| ||| |||||| |||||||||| ||||    
T  34601507 caatcaattacaacttttatcttaagaacatcaaacttcctcatctcctttattcaacatgtgatttccatct 34601435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 3367808 - 3367911
Alignment:
Q  144 catcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaatt 242  Q
    |||| ||||||||||||| |||| |||||| |||||||||||||||||||| ||||| |||||||||||||   ||| || || |||||||| |||||||    
T  3367808 catctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatctctttcgttccagaattatatcatatttatcattaaaagtaaatt 3367907  T
Q  243 accc 246  Q
    ||||    
T  3367908 accc 3367911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 278
Target Start/End: Complemental strand, 38839753 - 38839577
Alignment:
Q  99 aatctcattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatc 198  Q
    ||||| ||||| || || |||||||||||||| |||||  |||| |||| |||||||||||||| | | |||||  ||||||| |||||||||||  |||    
T  38839753 aatctaatttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgtgatcttgatc 38839656  T
Q  199 tcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaagtggggtaatgtaggtctca 278  Q
    |  ||||||||| |||||||||||| || ||||||   || |||||||   | ||||||||  ||||||||||||||||||    
T  38839655 ttcttcgttccacaatcgaatcctacttttcattaggagttaattaccgtcagttcatcaa--ggggtaatgtaggtctca 38839577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 49897901 - 49898007
Alignment:
Q  149 caagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatcct-attgtcattaaaggtaaattacccc 247  Q
    ||||||| || ||||| | | |||| |||||||||||||||||||| ||||| || |||| ||||||||||| | |||||||||| |||||||||||| |    
T  49897901 caagaacgtcgaacttcttcttctccttcattcaacatgtgatctccatctcctttgttctagaatcgaatcataattgtcattagaggtaaattaccac 49898000  T
Q  248 taattca 254  Q
    | |||||    
T  49898001 tgattca 49898007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 68100 - 68198
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaat 219  Q
    |||||||||| ||||| |||||  ||  |||||||||| ||||| | |||||| |||||| ||||||||||||| ||||  ||||||||| ||||||||    
T  68100 ttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgttccaaaatcgaat 68198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 10775005 - 10775122
Alignment:
Q  106 ttttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcg 205  Q
    |||| ||||| ||| |||||| |||||  |||||||| |||| | ||||||||||| || | | ||| ||||||||||||||||||||  || |  ||||    
T  10775005 ttttttttatctttcttcttataatcaaatatcattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtgatcttcattttcttcg 10775104  T
Q  206 ttccagaatcgaatccta 223  Q
    ||||| ||||||||||||    
T  10775105 ttccataatcgaatccta 10775122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 35956982 - 35957083
Alignment:
Q  117 tttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcg 216  Q
    |||||||||||||| | ||| |||||  ||| ||| |||||||||||||||||| ||||| ||| || |||||||||| ||||  ||||||| | |||||    
T  35956982 tttattcttacaattaattaccatttttatctcaaaaacatcaaacttttccatttcttttatttaatatgtgatctccatctatttcgttcaaaaatcg 35957081  T
Q  217 aa 218  Q
    ||    
T  35957082 aa 35957083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 3232131 - 3232270
Alignment:
Q  121 ttcttacaatcagttatcatttacatcc-caagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaat 219  Q
    |||||||||| ||||| ||||| || || |||||||||| | ||| | |||||  |||||||||||||| ||||| ||||| ||  ||| || |||||||    
T  3232131 ttcttacaattagttaccattttcaacctcaagaacatcca-cttcttcatcttcttcattcaacatgtaatctccatctctttacttctagtatcgaat 3232229  T
Q  220 ccta-ttgtcattaaaggtaaattacccctaattcatcaag 259  Q
    | || || |||||| ||||||||| ||||||||||||||||    
T  3232230 catacttatcattagaggtaaattgcccctaattcatcaag 3232270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 383
Target Start/End: Original strand, 67983 - 68193
Alignment:
Q  175 ttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaag-tggggtaatgtag 272  Q
    ||||||| |||||||||||  ||||| ||| ||||| ||||| ||| || ||||||||| |||||||||||| | | |||||||   |  ||||||| ||    
T  67983 ttcattctacatgtgatcttcatctctttcattccaaaatcggatcataattgtcattagaggtaaattaccac-atttcatcatcattaggtaatgcag 68081  T
Q  273 gtctcatcagtaggttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctt 371  Q
    | |||||   |||||||||||||||||  | |||||| ||| || |||| |||||| || |||||||||| ||| ||| || ||||||| || |||| ||    
T  68082 gcctcattgataggttttttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttt 68181  T
Q  372 tcattccaaaat 383  Q
    || |||||||||    
T  68182 tcgttccaaaat 68193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 45136812 - 45136757
Alignment:
Q  99 aatctcattttctttatatttattcttacaatcagttatcatttacatcccaagaa 154  Q
    |||||||||||||| || ||||||||||||||||||||| |||| |||| ||||||    
T  45136812 aatctcattttcttcatctttattcttacaatcagttattattttcatcgcaagaa 45136757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 3367806 - 3367879
Alignment:
Q  311 ttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaatt 384  Q
    |||||||||| |||||||||||| |||||||  || |||||| ||||||| || ||||||||| ||||| ||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatctctttcgttccagaatt 3367879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 42819624 - 42819697
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctc 194  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||| | ||||  |||| |||||||| |||||||    
T  42819624 ttcttacaatcaattatcattttcatctcaagaacataaaacttattcatcattttctttcaacatatgatctc 42819697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 287 - 387
Target Start/End: Original strand, 44330462 - 44330563
Alignment:
Q  287 ttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaattg 385  Q
    |||||||||||||||| |||||| |||||| |||||||||||| | |||||||| | | | |||| | ||||||| |||||||| || |||| | |||||    
T  44330462 ttttttcttacaaccatttaccattttcatatcaaaaacatcacacttcttcatttccattattctacatgtgatctctatctcatttattcaagaattg 44330561  T
Q  386 aa 387  Q
    ||    
T  44330562 aa 44330563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 46080974 - 46081047
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctc 194  Q
    |||||||||||| ||| ||||| |||| ||||||||| |||||| | |||||| |||| ||||||||| |||||    
T  46080974 ttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgtaatctc 46081047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 434
Target Start/End: Original strand, 12144967 - 12145114
Alignment:
Q  285 ggttttttcttacaaccaattaccatttc-atctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaat 383  Q
    ||||||||||||||| |||||| |||||  ||||||| |   ||||| ||||||||||  || |||||| |||||||||  |||||| ||| || |||||    
T  12144967 ggttttttcttacaatcaattatcatttttatctcaata---tcaaacttcttcatctcattcattcaacatgtgattttcatctctgtcactctaaaat 12145063  T
Q  384 tgaaccctacttgtcactaggggtaaactatccccaatttatcaaggggta 434  Q
      || ||||||| ||| ||| |||||| || ||||||||||| || |||||    
T  12145064 caaatcctacttatcaatagaggtaaattagccccaatttattaacgggta 12145114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 2534468 - 2534429
Alignment:
Q  310 tttcatctcaaaaacatcaaatttcttcatctacttaatt 349  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  2534468 tttcatctcaaaaacatcaaacttcttcatctccttaatt 2534429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 422
Target Start/End: Original strand, 24874595 - 24874734
Alignment:
Q  285 ggttttttcttacaaccaattacca-tttcatctcaaaaacatcaaa-tttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaa 382  Q
    ||||||||||||||| ||||||||| |||||| | || || |||||| ||| ||||||| | |||||||| ||||||| ||| |||  ||||||| | ||    
T  24874595 ggttttttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtgatctctgtcttattcattctagaa 24874694  T
Q  383 ttgaaccctacttgtcactaggggtaaactatccccaatt 422  Q
    | |||  |||||||||| ||||| | || ||||| |||||    
T  24874695 tcgaatgctacttgtcattagggatgaattatccgcaatt 24874734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 46080970 - 46081025
Alignment:
Q  287 ttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcatct 341  Q
    ||||||||||||| ||||||||| ||||||||||| ||||| ||| ||||||||||    
T  46080970 ttttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatct 46081025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 41148651 - 41148570
Alignment:
Q  178 attcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaag 259  Q
    |||||||||||||| || ||||| ||||||| |||||||||| ||| || ||||||  | ||||||||||| |||||||||||    
T  41148651 attcaacatgtgatatccatctccttcgttctagaatcgaattctacttttcattagggataaattacccc-aattcatcaag 41148570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 3231946 - 3232031
Alignment:
Q  106 ttttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgat 191  Q
    ||||||| || |||||  ||||||||||||   |||| |||| |||||||| ||||||| | ||| || |||||||||||||||||    
T  3231946 ttttcttcatgtttatctttacaatcagttgctattttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgat 3232031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 7104315 - 7104400
Alignment:
Q  168 catctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaatt 252  Q
    |||||| |||||||||||||| || |  ||||| |||||| |||||||||||| || ||||||||| | |||| ||||||| ||||    
T  7104315 catctccttcattcaacatgtaatattcatctctttcgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 10775166 - 10775231
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacat 186  Q
    |||||| ||||| ||| ||||| ||||  ||||||||||||||| | |||||||||| ||||||||    
T  10775166 ttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacat 10775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 24874601 - 24874714
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttc-catctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaat 219  Q
    |||||||||||| ||| ||||| |||   ||||| |||||||||||  ||||||  | |||||||||||||||||  ||| |||| ||| ||||||||||    
T  24874601 ttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtgatctctgtcttattcattctagaatcgaat 24874700  T
Q  220 ccta-ttgtcatta 232  Q
     ||| |||||||||    
T  24874701 gctacttgtcatta 24874714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 341
Target Start/End: Original strand, 10775161 - 10775217
Alignment:
Q  286 gttttttcttacaaccaattacca-tttcatctcaaaaacatcaaatttcttcatct 341  Q
    ||||||||||| || ||||||||| |||||||| || ||||||||| ||||||||||    
T  10775161 gttttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatct 10775217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 257
Target Start/End: Original strand, 15321025 - 15321181
Alignment:
Q  102 ctcattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctca 201  Q
    ||||||||||| || || ||| ||||||  |||| |||||| | || ||| ||||| ||| |||| ||| || |||||||||||||| ||||  |||||     
T  15321025 ctcattttcttcatcttaattattacaacgagttgtcattttcttctcaaaaacattaaattttttcatatccttcattcaacatgtaatcttcatctct 15321124  T
Q  202 ttcgttccagaatcgaatcct-attgtcattaaaggtaaattacccctaattcatca 257  Q
    ||| || ||||||| |||| | ||||||||||   ||||| |||| | |||||||||    
T  15321125 ttcatttcagaatcaaatcataattgtcattatgagtaaactacctcaaattcatca 15321181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 32342603 - 32342730
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatc 220  Q
    |||||||||||| ||||||||| |||| ||| |||||||||||||| |||||| ||||||||||||| |||||| || |  |||||||||||||| ||||    
T  32342603 ttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatgcgatctctatttttttcgttccagaatcaaatc 32342702  T
Q  221 cta-ttgtcattaaaggtaaattacccc 247  Q
     || || ||||||| | |||||||||||    
T  32342703 atatttatcattaaggataaattacccc 32342730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 258
Target Start/End: Original strand, 20067902 - 20068057
Alignment:
Q  104 cattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcatt 203  Q
    ||||||||| || |||||||||| ||||||||||||||| |||| ||| ||||| | |||| | | ||   ||| |||||||||||||||    ||||||    
T  20067902 cattttcttcatttttattcttagaatcagttatcattttcatctcaataacattatacttcttcttcatcttccttcaacatgtgatcttcccctcatt 20068001  T
Q  204 cgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaa 258  Q
    ||||||| |||||||||||| ||||| |||| |||||||||||   ||||||||||    
T  20068002 cgttccataatcgaatcctacttgtctttaagggtaaattaccttcaattcatcaa 20068057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 292
Target Start/End: Original strand, 32047047 - 32047163
Alignment:
Q  175 ttcattcaacatgtgatctcaatctcattcgttccagaatcgaatcctatt-gtcattaaaggtaaattacccctaattcatcaagtggggtaatgtagg 273  Q
    ||||||||||||||||||||  | |  ||||||||||||| |||||||||| |||| || | ||||||||||   ||||||||||| ||  |||||||||    
T  32047047 ttcattcaacatgtgatctcctttttcttcgttccagaattgaatcctatttgtcaatagaagtaaattaccatcaattcatcaagagg--taatgtagg 32047144  T
Q  274 tctcatcagtaggtttttt 292  Q
    || |||| |||||||||||    
T  32047145 tcgcatcggtaggtttttt 32047163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 32047197 - 32047318
Alignment:
Q  310 tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccaaaattgaaccctacttgtcactaggggtaa 409  Q
    ||||||||||| ||||||||| ||||||||||  || |||||| || |||| |   |||  ||||||||| ||||||| ||||||| ||| ||| |||||    
T  32047197 tttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctacttatcattagaggtaa 32047296  T
Q  410 actatccccaatttatcaaggg 431  Q
    | ||||| ||||| ||||||||    
T  32047297 attatcctcaattcatcaaggg 32047318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 32047181 - 32047316
Alignment:
Q  125 tacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta- 223  Q
    |||| ||| ||| ||||| |||| |||||||||||||||| | |||||| |||||||||||| |||| |   |||  ||| ||||| ||| ||||||||     
T  32047181 tacattcatttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctac 32047280  T
Q  224 ttgtcattaaaggtaaattacccctaattcatcaag 259  Q
    || |||||| |||||||||| ||  |||||||||||    
T  32047281 ttatcattagaggtaaattatcctcaattcatcaag 32047316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 379
Target Start/End: Original strand, 32342598 - 32342692
Alignment:
Q  286 gttttttcttacaaccaattaccattt-catctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattcca 379  Q
    |||||||||||||| |||||| ||||| |||||||||||||||||| || |||||||  || |||||| ||| ||| ||||| | |||| |||||    
T  32342598 gttttttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatgcgatctctatttttttcgttcca 32342692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 20206533 - 20206484
Alignment:
Q  115 tatttattcttacaatcagttatcatttacatcccaagaacatcaaactt 164  Q
    |||||||||||||||||| ||||||||| |||| ||| ||||||||||||    
T  20206533 tatttattcttacaatcaattatcattttcatctcaataacatcaaactt 20206484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 22100556 - 22100507
Alignment:
Q  115 tatttattcttacaatcagttatcatttacatcccaagaacatcaaactt 164  Q
    |||||||||||||||||| ||||||||| |||| ||| ||||||||||||    
T  22100556 tatttattcttacaatcaattatcattttcatctcaataacatcaaactt 22100507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 23577164 - 23577224
Alignment:
Q  131 cagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgat 191  Q
    |||||| ||||| |||| ||| ||||||| |||| |||||||| |||||||||||| ||||    
T  23577164 cagttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacatctgat 23577224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 39341197 - 39341340
Alignment:
Q  116 atttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatc 215  Q
    |||| ||||||| || ||||| ||||| ||||  ||||| ||||||||||| |||||| ||||||||||||| |||||| || |  ||||||| | |||     
T  39341197 attttttcttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaatt 39341296  T
Q  216 gaatccta-ttgtcattaaaggtaaattacccctaattcatcaa 258  Q
    ||||| || || |||||| |||||||||||||||||||||||||    
T  39341297 gaatcttatttatcattagaggtaaattacccctaattcatcaa 39341340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 413
Target Start/End: Complemental strand, 42091916 - 42091740
Alignment:
Q  235 ggtaaattacccctaattcatcaagtggggtaatgtaggtctcatcagtaggttttttcttacaaccaattaccattt-catctcaaaaacatcaaattt 333  Q
    ||||||||||||| ||||| |||||  ||||| |||| |||||| || | | ||||| |||||||  ||||| ||||| |||||||||||||||||| ||    
T  42091916 ggtaaattacccccaattcgtcaag--gggtattgtatgtctcaccaat-gctttttccttacaattaattatcattttcatctcaaaaacatcaaactt 42091820  T
Q  334 cttcatctacttaattcaatatgtgatttctatctctttcattccaaaattgaaccctacttgtcactaggggtaaacta 413  Q
     |||||||  || ||| || |||||||||| || ||||||| |||||||| ||   |||||||||| |||||| ||||||    
T  42091819 tttcatctctttcatttaacatgtgatttcaatatctttcactccaaaatcgagtactacttgtcaataggggaaaacta 42091740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 13283928 - 13283810
Alignment:
Q  105 attttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattc 204  Q
    |||||||| || ||||||||| |||||| ||   |||| |||| |||||||||||||||| | || ||| |||||||||| ||||||||| ||| | ||     
T  13283928 attttcttcatctttattctttcaatcaattgctattttcatcacaagaacatcaaacttattcaactcattcattcaacgtgtgatctccatcactttt 13283829  T
Q  205 gttccagaatcgaatccta 223  Q
    |||| ||||||||||||||    
T  13283828 gttctagaatcgaatccta 13283810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 42091861 - 42091787
Alignment:
Q  123 cttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaat 197  Q
    |||||||| | ||||||||| |||| ||| |||||||||||||| ||||||||||||| |||||||||| |||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgatttcaat 42091787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 279
Target Start/End: Original strand, 2562971 - 2563079
Alignment:
Q  168 catctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaagtggggta 266  Q
    ||||||||||||||||||||||||||| || ||||| ||| |||||||||||| || || |||||   |||||||||||| | |||||||||  ||||||    
T  2562971 catctctttcattcaacatgtgatctctatatcatttgtttcagaatcgaatcatacttatcatt-tgggtaaattacccat-attcatcaa--ggggta 2563066  T
Q  267 atgtaggtctcat 279  Q
    |||||||||||||    
T  2563067 atgtaggtctcat 2563079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 48646405 - 48646515
Alignment:
Q  111 tttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttcca 210  Q
    ||||| |||||||||| ||||| | | ||||| ||||  |||||||||||||||||| || |  |||||||||||| || |||| |||||||||||| ||    
T  48646405 tttatttttattcttataatcaatgaccattttcatcttaagaacatcaaacttttc-atattcttcattcaacatatggtctctatctcattcgtttca 48646503  T
Q  211 gaatcgaatcct 222  Q
     |||||||||||    
T  48646504 taatcgaatcct 48646515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 102 - 341
Target Start/End: Original strand, 54437621 - 54437860
Alignment:
Q  102 ctcattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctca 201  Q
    ||||||||| | || |||||| ||||||  | ||| ||||| |||| ||| ||||| |||||| | ||| || |||||| ||||||| | ||  |||||     
T  54437621 ctcattttcctcatctttattattacaacaaattaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgtaaacttcatctct 54437720  T
Q  202 ttcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaagtggggtaatgtaggtctcatcagtaggttttttcttacaac 300  Q
    |||||||||||||  |||| |  ||||||| |   ||||||| |||| |||| |||||   |||||||| | | ||||| | ||| |||||||||||||     
T  54437721 ttcgttccagaatttaatcatggttgtcatcatgcgtaaatttccccaaattaatcaat--gggtaatgcatgcctcattaatagattttttcttacaat 54437818  T
Q  301 caattaccatttca-tctcaaaaacatcaaatttcttcatct 341  Q
    || ||||||||| | |||||||||||||||| ||||||||||    
T  54437819 cagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 255
Target Start/End: Complemental strand, 20519365 - 20519233
Alignment:
Q  124 ttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta 223  Q
    |||||||| || | ||||| |||| ||||||| ||||| || | ||||||||||||| ||||||||||||| ||||| || |||||| |||  ||||| |    
T  20519365 ttacaatccgtaaccattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctcctttgttccaaaatttaatccaa 20519266  T
Q  224 -ttgtcattaaaggtaaattacccctaattcat 255  Q
     || |||||| || ||||||||| || ||||||    
T  20519265 cttatcattatagttaaattacctctgattcat 20519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 21570356 - 21570436
Alignment:
Q  106 ttttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacat 186  Q
    |||||||||| ||||||||||||||   |||  |||| |||| |||||||||||||||||| |||||  ||| ||||||||    
T  21570356 ttttctttatctttattcttacaattgattactattttcatcacaagaacatcaaactttttcatctaattcgttcaacat 21570436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 7641833 - 7641896
Alignment:
Q  103 tcattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaactttt 166  Q
    |||||||||| |  |||||||||| |||||||||||||||  ||  ||||||||||||||||||    
T  7641833 tcattttcttcaactttattcttaaaatcagttatcatttttatatcaagaacatcaaactttt 7641896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 34762025 - 34761943
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcatt 203  Q
    ||||| |||||| ||||||||| |||| | |||| ||||||| |||  ||||| |||| ||||||||||||||  ||||||||    
T  34762025 ttctttcaatcaattatcattttcatctcgagaatatcaaacctttttatctccttcactcaacatgtgatcttcatctcatt 34761943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 46258554 - 46258513
Alignment:
Q  235 ggtaaattacccctaattcatcaagtggggtaatgtaggtctca 278  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||    
T  46258554 ggtaaattacccccaattcatcaa--ggggtaatgtaggtctca 46258513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 22050902 - 22051013
Alignment:
Q  168 catctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattacccctaattcatcaagtggggta 266  Q
    |||||| |||||||||||||||||||  ||||||||| || |||||||||||| || || ||||||| ||||||||||||| ||||||| ||  ||||||    
T  22050902 catctccttcattcaacatgtgatcttcatctcattcctttcagaatcgaatcatatttatcattaagggtaaattacccccaattcataaa--ggggta 22050999  T
Q  267 atgtaggtctcatc 280  Q
     ||||| |||||||    
T  22051000 ttgtagatctcatc 22051013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 151 - 341
Target Start/End: Original strand, 25062352 - 25062544
Alignment:
Q  151 agaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta-ttgtcattaaaggtaaattaccccta 249  Q
    |||||||||||||| | |||||  |||||| ||||||||||||  ||||| || |||||| |||| ||||||| |||| ||||  ||||||||||||  |    
T  25062352 agaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctca 25062451  T
Q  250 attcatcaagtggggtaatgtaggtctcatca--gtaggttttttcttacaaccaattacc-atttcatctcaaaaacatcaaatttcttcatct 341  Q
    |||||||||  ||  |||||||||  ||| ||   | | ||||||||||||| ||||||||  ||||||||||| || |||||| ||||||||||    
T  25062452 attcatcaa--ggaataatgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatct 25062544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 15131653 - 15131571
Alignment:
Q  285 ggttttttcttacaaccaattaccatttc-atctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctat 366  Q
    ||||||||||||| | || |||||||||  ||||||| |||||||||||||||||||| ||| |||||  ||||||| |||||    
T  15131653 ggttttttcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatctctat 15131571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 15131647 - 15131574
Alignment:
Q  121 ttcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctc 194  Q
    ||||||| |||||||| |||||  ||| ||||||||||||| || | |||||| |||||||| |||||||||||    
T  15131647 ttcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatctc 15131574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 428
Target Start/End: Original strand, 55897574 - 55897693
Alignment:
Q  310 tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctcttt-cattccaaaattgaaccctacttgtcactaggggta 408  Q
    ||||||||| ||||||||||| ||||| ||||  || |||||| || |||| |  |||||||| | |||||||||| ||  |||||||| | || |||||    
T  55897574 tttcatctccaaaacatcaaacttctttatcttattcattcaacatatgatcttcatctcttttcgttccaaaattaaattctacttgttattaagggta 55897673  T
Q  409 aactatccccaatttatcaa 428  Q
    |||||||| ||||| |||||    
T  55897674 aactatcctcaattcatcaa 55897693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 20512917 - 20512795
Alignment:
Q  103 tcattttctttatatttattcttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcat 202  Q
    |||||||||| || |||||| ||| ||||| || |||||| ||||  |  |||||||||||| | |||||  |||||| ||||||| ||||| || || |    
T  20512917 tcattttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgtaatctccatatcct 20512818  T
Q  203 tcgttccagaatcgaatcctatt 225  Q
    ||||| || ||||||||| ||||    
T  20512817 tcgtttcataatcgaatcatatt 20512795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 25234436 - 25234300
Alignment:
Q  124 ttacaatcagttatcatttacatcccaagaacatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta 223  Q
    |||||||||||||||| || |||   || |||||||||||| |  ||||| |||||| ||  |||||| |  | ||| | ||||||| ||||||||| ||    
T  25234436 ttacaatcagttatcactttcattttaaaaacatcaaacttatttatctccttcatttaaggtgtgatttatacctcttacgttccaaaatcgaatcgta 25234337  T
Q  224 tt-gtcattaaaggtaaattacccctaattcatcaag 259  Q
    || ||||| |  |||||||||||| ||||||||||||    
T  25234336 tttgtcatgagcggtaaattacccgtaattcatcaag 25234300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 37012 - 36943
Alignment:
Q  154 acatcaaacttttccatctctttcattcaacatgtgatctcaatctcattcgttccagaatcgaatccta 223  Q
    |||||||| || | |||||| || ||||||||||||||||  |||||||| ||| || ||||||||||||    
T  37012 acatcaaatttcttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatccta 36943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University