View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16505_high_6 (Length: 516)
Name: NF16505_high_6
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Complemental strand, 32185268 - 32184784
Alignment:
| Q |
17 |
atatccagggaaccacactgattattaattaaaatctattttaatactagaatatatgaagttgtataagactaaatttgctaccttaagtattattcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32185268 |
atatccagggaaccacactgattattaattaaaatctattttaatactagaatatatgaagttgtataagactaaatttgctaccttaagtattattcaa |
32185169 |
T |
|
| Q |
117 |
ttcattccaatccaatgtgtgaattaggaagg-aaaataaccaagtgcaatattgattgatagatgaataaacatataagagagaactctcaatcctcac |
215 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32185168 |
ttcattccaatccaatgtgtgaattaggaaagcaaaataaccaagtgcaatattgattgatagatgaataaacatataagagagaactctcaatcctcac |
32185069 |
T |
|
| Q |
216 |
tctatgtatccctctatgaatgaaaatctttcagttttgtacttggaatccaatgcctcgtccccattttcttctgcagtttctgaaaatcttatgttgt |
315 |
Q |
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| T |
32185068 |
tctatttatccctctatgaatgaaaatctttcagttttgtacttggaatccaatgcctcgtccccattttcttctgcagtttctgaaaatcttatgttgt |
32184969 |
T |
|
| Q |
316 |
tcatcggacgcatttatgagcactttatagatttctaatcctaaaagagtatcagaataatttccattttcataaacatcgatgaaaccactcatgattt |
415 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32184968 |
tcatcggacacatttatgagcactttatagatttctaatcctaaaagagtatcagaataatttccattttcataaacatcgatgaaaccactcatgattt |
32184869 |
T |
|
| Q |
416 |
tcacagcacatatacaccctgcatttttccttcatgatatttgcgttaattttctttgcaatgttgtccaagaagaatttcctcg |
500 |
Q |
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| T |
32184868 |
tcacagcacatatacaccctgcatttttccctcatgatatttgcgttaattttctttgcaatgttgtccaagaagaatttcctcg |
32184784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 310 - 476
Target Start/End: Original strand, 32190190 - 32190358
Alignment:
| Q |
310 |
tgttgttcatcggacgcatttatgagcactttatagatttctaatcctaaaagagtatcagaataatttccattttcataaacatcgatgaaaccactca |
409 |
Q |
| |
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||||||||||| || | ||| ||||||| | | ||||||| ||| ||| ||||||||||||| |||||||| | ||||||||||||||||||| ||| |
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| T |
32190190 |
tgttgttcatcagatgtattcatgagcagtgtttagatttgtaaacctggaagagtatcagaagaatttccactgtcataaacatcgatgaaacgactag |
32190289 |
T |
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| Q |
410 |
tga-ttttcacagcacatatacaccctgcatttttccttcat-gatatttgcgttaattttctttgcaa |
476 |
Q |
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| T |
32190290 |
tgatttttcgcagcacatatatacccttcattttttcctcatcaatatctgagttaaatttctttgcaa |
32190358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 500
Target Start/End: Complemental strand, 32192524 - 32192488
Alignment:
| Q |
464 |
attttctttgcaatgttgtccaagaagaatttcctcg |
500 |
Q |
| |
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| T |
32192524 |
attttctttgcaatattgtccaagaagaatttcctcg |
32192488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 7409592 - 7409654
Alignment:
| Q |
203 |
tctcaatcctcactctatgtatccctctatgaatgaaaatctttcagttttgtacttggaatc |
265 |
Q |
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| T |
7409592 |
tctcaatcctcactctacttttccatcttgcaatgaaaatctttcagtttggtacttggaatc |
7409654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 32193791 - 32193689
Alignment:
| Q |
103 |
taagtattattcaattcattccaatcc-aatgtgtgaattagg-aaggaaaataaccaagtgcaatattgattgatagatgaataaacatataagagaga |
200 |
Q |
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|||||||||||| |||||||||||||| | ||||||| ||||| || ||| ||||||| | |||| |||||| |||||||||| |||||||||||| |
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| T |
32193791 |
taagtattattctattcattccaatcctagtgtgtgagttaggaaatgaaggtaaccaattacaat----attgatggatgaataaatatataagagaga |
32193696 |
T |
|
| Q |
201 |
actctca |
207 |
Q |
| |
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| ||||| |
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| T |
32193695 |
attctca |
32193689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 279 - 500
Target Start/End: Original strand, 8844176 - 8844400
Alignment:
| Q |
279 |
ccattttcttctgcagtttctg-aaaatcttatgttgttcatcggacgcatttatgagcactttatagatttctaatcctaaaagagtatcagaataatt |
377 |
Q |
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|||||||||||||||||||||| ||||||| | | ||||||||| | | ||| ||||||| | |||| |||| ||| || ||| |||||||| |||| |
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| T |
8844176 |
ccattttcttctgcagtttctgtaaaatctcaagctgttcatcgtatgtattcatgagcagtgtatatatttgtaaaccaggaagtgtatcagaggaatt |
8844275 |
T |
|
| Q |
378 |
tccattttcataaacatcgatgaaaccactcatgat-tttcacagcacatatacaccctgcatttttccttcat-gatatttgcgttaattttctttgca |
475 |
Q |
| |
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|||| |||||||||| |||||||||| || |||| |||| |||||||| || ||||||||||||| |||||| | ||| || |||||||||| | ||| |
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| T |
8844276 |
tccactttcataaacgtcgatgaaactgcttgtgatctttcgcagcacatgtagaccctgcattttttcttcatcgttatctgagttaattttcctagca |
8844375 |
T |
|
| Q |
476 |
atgttgtccaagaagaatttcctcg |
500 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
8844376 |
atgttgtccaagaagaatttcctcg |
8844400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 498
Target Start/End: Original strand, 8808373 - 8808506
Alignment:
| Q |
364 |
gtatcagaataatttccattttcataaacatcgatgaaaccactcatgat-tttcacagcacatatacaccctgcatttttccttcatgatatttgcgtt |
462 |
Q |
| |
|
||||||||| |||||||| |||||||||| |||| ||||| ||| |||| |||||||| ||| || ||||||||||||| | |||| | | || ||| |
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| T |
8808373 |
gtatcagaagaatttccactttcataaacgtcgaggaaacttctcgtgatctttcacaggacaggtagaccctgcattttttcctcat--tgtgtgagtt |
8808470 |
T |
|
| Q |
463 |
aattttctttgcaatgttgtccaagaagaatttcct |
498 |
Q |
| |
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||||||| | |||||||| |||| |||||||||||| |
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| T |
8808471 |
aattttcctagcaatgttttccatgaagaatttcct |
8808506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 500
Target Start/End: Complemental strand, 36375828 - 36375604
Alignment:
| Q |
279 |
ccattttcttctgcagtttctgaa-aatcttatgttgttcatcggacgcatttatgagcactttatagatttctaatcctaaaagagtatcagaataatt |
377 |
Q |
| |
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|||||||||| ||||||||||| | ||||| |||||||||||||| ||||| | ||||| | ||||||||| || || ||||||||||||| || | |
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|
| T |
36375828 |
ccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaact |
36375729 |
T |
|
| Q |
378 |
tccattttcataaacatcgatgaaaccactcatga-ttttcacagcacatatacaccctgcatttttccttcat-gatatttgcgttaattttctttgca |
475 |
Q |
| |
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|||| |||||||||||||| |||||| | ||| ||||| ||||||| || ||||| ||||||| | ||| ||||||| ||||||||||||| || |
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| T |
36375728 |
tccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctatacccttcattttttccgcatcaatatttgagttaattttcttttca |
36375629 |
T |
|
| Q |
476 |
atgttgtccaagaagaatttcctcg |
500 |
Q |
| |
|
||||| |||||||||||||| |||| |
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|
| T |
36375628 |
atgttctccaagaagaattttctcg |
36375604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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