View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16505_low_1 (Length: 784)
Name: NF16505_low_1
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 309 - 588
Target Start/End: Original strand, 927018 - 927297
Alignment:
| Q |
309 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
408 |
Q |
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| T |
927018 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
927117 |
T |
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| Q |
409 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
508 |
Q |
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| T |
927118 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
927217 |
T |
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| Q |
509 |
tatagctttgatcttcctaggatgcaccttatagacctaagcataagcagcaccttatagagattactcataatataata |
588 |
Q |
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| T |
927218 |
tatacctttgatcttcctaggatgcaccttatagacctaagcataagcagcaccttatagagattactcataatataata |
927297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 926250 - 926560
Alignment:
| Q |
1 |
gagtgtgatttggttcaaatcgatgatctcttctt---tggcacatggtttggaggaaataaaagtttcttccataacttgtgtttcttttatgagttta |
97 |
Q |
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| T |
926250 |
gagtgtgatttggttcaaatcgatgatctcttcttctttggcacatggtttggaggaaataaaagtttcttccataacttgtgtttcttttatgagttta |
926349 |
T |
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| Q |
98 |
tttggatgcattcaacaagtgtttatttttaggctatttataaa----gtcatggagatgnnnnnnnggaagttgcacggaagaaaggtcgaagttggga |
193 |
Q |
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| T |
926350 |
tttggatgcattcaacaagtgtttatttttaggctatttataaataaagtcatggagatgaaaaaaaggaagttgcacggaagaaaggtcgaagttggga |
926449 |
T |
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| Q |
194 |
tcaagcaagaaagtgaagtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatgaag |
293 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
926450 |
tcaagcaagaaagtgaagtaatggatttcaaggctgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatgaag |
926549 |
T |
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| Q |
294 |
ctcacatccat |
304 |
Q |
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| T |
926550 |
ctcacatccat |
926560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 591 - 756
Target Start/End: Original strand, 927849 - 928013
Alignment:
| Q |
591 |
ctaagactgttttaacttcgcttgcctgttactttcctttcttaacaaggcaaacctcaaatatcacnnnnnnnnnnnnnntgtaatacatcagaattga |
690 |
Q |
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| T |
927849 |
ctaaaactgttttaacttcgcttgcctattactttcctttcttaacaaggcaaacctcaaatatcacaaaaaaagaaaaa-tgtaatacatcagaattga |
927947 |
T |
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| Q |
691 |
ttctaaagatagatttcaatattaaaagaaaattatgattgaaaaatgaaacttattaaagttgga |
756 |
Q |
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| T |
927948 |
ttctaaagatagatttcaatattaaaagaaaattatgattgaaaaatgaaacgtattaaagttgga |
928013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 924473 - 924555
Alignment:
| Q |
210 |
agtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatgaa |
292 |
Q |
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| T |
924473 |
agtaagggatttcaaggctgctttatgtctctgcctgccatggttgacttgaatatgcattaaaatggatccaagcctatgaa |
924555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 928570 - 928641
Alignment:
| Q |
1 |
gagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtttcttccat |
72 |
Q |
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| T |
928570 |
gagtgtgatttggttcaaatcaatgatttcttctttgccacatggttttgaagaaataaaagtttcctccat |
928641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 939495 - 939569
Alignment:
| Q |
1 |
gagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtttcttccataac |
75 |
Q |
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| T |
939495 |
gagtgtgatttggttcaaatcaatgctttgttcattgccacttggtttggaagaaataaaagtttcctccataac |
939569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 935703 - 935740
Alignment:
| Q |
1 |
gagtgtgatttggttcaaatcgatgatctcttctttgg |
38 |
Q |
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| T |
935703 |
gagtgtgatttggttcaaatcaatgatctcttctttgg |
935740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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