View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16505_low_10 (Length: 471)
Name: NF16505_low_10
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 30526751 - 30527193
Alignment:
| Q |
19 |
tttgaatcgatgaaattaagcggaatcaagttgtatagagttatattcatttgtttggaattctataaattaatgaagtgaaatagaatataatggaatt |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
30526751 |
tttgaatcgatgaaattaagcgaaatcaagttgtatagagttatattcatttgtttggaattctataaattaatgaagtgaaatgaaatataatgaaatt |
30526850 |
T |
|
| Q |
119 |
cattgcattcatatcatcctctcgtattatttttcattccccaatttgataaatagagtatacaatagaaccaaatatattgattaaataataactattt |
218 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30526851 |
cattgcgttcatatcatcctctcatattatttttcattccccaaattgataaatagagtatacaatagaaccaaatatattgattaaataataactattt |
30526950 |
T |
|
| Q |
219 |
gatcatgtatcatttctttttctctttaatcatatattcttcatctgatccagatttcttcttctccttgtatggatccctctcccgtctttgcttgtta |
318 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30526951 |
gatcatgtatcatttctttttctctttagtcatatatacttcatctgatgcagatttattcttctccttgtatggatccctctcccgtctttgcttgtta |
30527050 |
T |
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| Q |
319 |
tgttttgttacttctaattataaaatgaagaatgnnnnnnnnnnnntcaaactgatcgtgtttcatcattttttatttcttctcctgtaatcattaaaac |
418 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
30527051 |
tgttttgttacttctaattataaaatgaagaaag--aaaaaaaaaatcaaacttgttgtgtttcatcattctctatttcttctcctgtaatcattaaaac |
30527148 |
T |
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| Q |
419 |
ccttttatttatggtttgccttgagc-tttcctttcttctctctc |
462 |
Q |
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|||||||||||||||||| ||||||| |||||||||||| ||||| |
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| T |
30527149 |
ccttttatttatggtttgtcttgagcttttcctttcttcactctc |
30527193 |
T |
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