View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16505_low_11 (Length: 396)
Name: NF16505_low_11
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 54040811 - 54040453
Alignment:
| Q |
18 |
ggtggttgttgtcgtgttacatggcttctctggttctatctctttttcatgttcttgctcatcgttgtgctattcgttttcaccatttttgcttttgttg |
117 |
Q |
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| T |
54040811 |
ggtggttgttgtcgtgttacatggcttctctggttctatctctttttcatgttcttgctcatcgttgtgctattcgttttcaccatttttgcttttgttg |
54040712 |
T |
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| Q |
118 |
tcactaacaaaggtgctggtgaatctctttccaataagggttacaaagagtatagacttggtgattattctaattggttgcagaaaagggttaatgataa |
217 |
Q |
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| T |
54040711 |
tcactaacaaaggtgctggtgaatctctttccaataagggttacaaagagtatagacttggtgattattctaattggttgcagaaaagggttaatgataa |
54040612 |
T |
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| Q |
218 |
tggtaattggaataggattaagagctgtttgcaatctggaaaagtttgcattgactttcattcccaatttctcaatgatactgctgataaattctacctc |
317 |
Q |
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| T |
54040611 |
tggtaattggaataggattaagagctgtttgcaatctggaaaactttgcattgactttcattcccaatttctcaatgatactgctgataaattctacctc |
54040512 |
T |
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| Q |
318 |
cagcacttgaatgctcttcaggttagtttctttttatctttgtttattcaatttatgtt |
376 |
Q |
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| T |
54040511 |
cagcacttgaatgctcttcaggttagtttctttttatctttctttattcaatttatgtt |
54040453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 3484467 - 3484541
Alignment:
| Q |
222 |
aattggaataggattaagagctgtttgcaatctggaaaagtttgcattgactttcattcccaatttctcaatgata |
297 |
Q |
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| T |
3484467 |
aattgaaataggcttaagagttgtttgcaat-tggacaagtttgctttgaatttcattcccaatttctcaatgata |
3484541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 41779276 - 41779202
Alignment:
| Q |
222 |
aattggaataggattaagagctgtttgcaatctggaaaagtttgcattgactttcattcccaatttctcaatgata |
297 |
Q |
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||||| |||||| ||||||| |||||||||| |||| |||||||| |||| ||||||||||||||||||||||||| |
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| T |
41779276 |
aattgaaataggcttaagagttgtttgcaat-tggacaagtttgctttgaatttcattcccaatttctcaatgata |
41779202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 3276698 - 3276645
Alignment:
| Q |
243 |
tgtttgcaatctggaaaagtttgcattgactttcattcccaatttctcaatgata |
297 |
Q |
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|||||||||| |||| |||||||| |||| |||||||||||||||| |||||||| |
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| T |
3276698 |
tgtttgcaat-tggataagtttgctttgaatttcattcccaatttcacaatgata |
3276645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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