View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16505_low_12 (Length: 360)
Name: NF16505_low_12
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 28938018 - 28938220
Alignment:
| Q |
12 |
tgagaagaaagcttatttcgtaggaaaataaatatgttagtcttgggggttcgattgttcttcttaatccggtcttaaatgttgtttcggttttttattt |
111 |
Q |
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| T |
28938018 |
tgagaagaaagcttatttcgtaggaaaataaatatgttagtcttgggggttcgattgttcttcttaatccggtcttaaatgttgtttgggttttttcttt |
28938117 |
T |
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| Q |
112 |
atcctttttaaaaatgtcggtgaaagtgtgaaggaagattactagaattcaaagagaatttctttgagaagggaaaggaatggtagttgggtaaaatgga |
211 |
Q |
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| T |
28938118 |
atcctttttaaaaatgtcggtgaaagtgtgaaggaagattactagaatccaaagagaatttctttgagaagggaaaggaatggtagttgggtaaaataga |
28938217 |
T |
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| Q |
212 |
gga |
214 |
Q |
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||| |
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| T |
28938218 |
gga |
28938220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 209 - 342
Target Start/End: Original strand, 28938240 - 28938373
Alignment:
| Q |
209 |
ggaggaagggttgggagtgaaggatattagggtggtaagtttgagtctaacgtccccctagattaaaattactgcactaaattcgacttgatgtttatca |
308 |
Q |
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| T |
28938240 |
ggaggaagggttgggagtgaaggatgttagggtggtaagtttgagtctaacgtccccctagattaaaattactgcactaaattcgacttgatgtttatca |
28938339 |
T |
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| Q |
309 |
tcaccatattggaatggatttgtaaatgtctacc |
342 |
Q |
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| T |
28938340 |
tcaccatattgaaatggatttgtaaatgtctacc |
28938373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 24614646 - 24614571
Alignment:
| Q |
102 |
ttttttatttatcctttttaaaaatgtcggtgaaagtgtgaaggaagattactagaattcaaagagaatttctttg |
177 |
Q |
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| T |
24614646 |
ttttttacttatcttttttgaaaatgccggttaaagtgcggaggaatattgttataattcaaagagaatttctttg |
24614571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 42449893 - 42449818
Alignment:
| Q |
102 |
ttttttatttatcctttttaaaaatgtcggtgaaagtgtgaaggaagattactagaattcaaagagaatttctttg |
177 |
Q |
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|||||||||||||||||||||| ||||||||| | ||||| |||| | || ||| || ||||||||||| ||||| |
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| T |
42449893 |
ttttttatttatcctttttaaagatgtcggtgcatgtgtggaggagggttcttaggatccaaagagaattcctttg |
42449818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 8719823 - 8719875
Alignment:
| Q |
125 |
atgtcggtgaaagtgtgaaggaagattactagaattcaaagagaatttctttg |
177 |
Q |
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| T |
8719823 |
atgtcggtgaaagtttggaggaagattgttagaattcaaagagatttcctttg |
8719875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 12279655 - 12279607
Alignment:
| Q |
129 |
cggtgaaagtgtgaaggaagattactagaattcaaagagaatttctttg |
177 |
Q |
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||||||||||||| ||| ||||| |||||||||||||||||| ||||| |
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| T |
12279655 |
cggtgaaagtgtggagggagattgttagaattcaaagagaattcctttg |
12279607 |
T |
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