View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16505_low_13 (Length: 357)
Name: NF16505_low_13
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 4587291 - 4586961
Alignment:
| Q |
15 |
aaccggttagcacaaagattt-aagtttattggtgaaagcaagtgaatgatttttacatctaacaccctcctcaagaaagttccctttggaataaagtat |
113 |
Q |
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| T |
4587291 |
aaccggttagcacaaagattttaagtttattggtgaaagcaagtgaatgatttttacatctaacacccccctcaagaaagttccctttggaataaagtat |
4587192 |
T |
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| Q |
114 |
ggatagcttcgaggcctaccttacttgctttgaaatttatatattgtataaaagaatggagataacaaggactgaactttaaactatatggccatcttat |
213 |
Q |
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| T |
4587191 |
ggatagcttcgaggcctaccttacttgctttgaaatttatatattatataaaagaatggagataacaaggactgaactgtaaactatatggccatcttat |
4587092 |
T |
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| Q |
214 |
aaagaaactaaccgca----atatatatgtaacaaagcaaagcatatttaaactaacagcataccatcccctctgctgctagttaaagaagagagcagtg |
309 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4587091 |
aaagaaactaaccacaatatatatatatgtaacaaagcaaagcatatttaaactaacagcataccatcccctctgctgctagttaaagaagagagcggtg |
4586992 |
T |
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| Q |
310 |
aggaaaatacaaaaaagaatcggacatgtca |
340 |
Q |
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| T |
4586991 |
aggaaaatacaaaaaagaatcggacatgtca |
4586961 |
T |
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