View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16505_low_16 (Length: 296)
Name: NF16505_low_16
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 14004099 - 14004379
Alignment:
| Q |
1 |
tcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14004099 |
tcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccat |
14004198 |
T |
|
| Q |
101 |
tagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataata |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14004199 |
tagcaggaaggatgggttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataata |
14004298 |
T |
|
| Q |
201 |
gtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14004299 |
gtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagt |
14004379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 5766705 - 5766425
Alignment:
| Q |
1 |
tcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccat |
100 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5766705 |
tcagcaatgaggtggatatcagtgctattaagagaaataaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccat |
5766606 |
T |
|
| Q |
101 |
tagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
5766605 |
tagcaggaaggatgagttggttggaaagattgagcgatgtgagtttcaacattgggaagctagagatttgagtaagaagtgcatctaggtcaccgtaata |
5766506 |
T |
|
| Q |
201 |
gtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5766505 |
gtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggctggatacaagatagt |
5766425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 17635712 - 17635611
Alignment:
| Q |
45 |
ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt |
144 |
Q |
| |
|
||||||| | || ||||||||||||||||| ||||| ||||||||||| || ||||||| |||| | ||||||||||||| |||||||| ||| ||||| |
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|
| T |
17635712 |
ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt |
17635613 |
T |
|
| Q |
145 |
tt |
146 |
Q |
| |
|
|| |
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|
| T |
17635612 |
tt |
17635611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 17642991 - 17642890
Alignment:
| Q |
45 |
ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt |
144 |
Q |
| |
|
||||||| | || ||||||||||||||||| ||| | ||||||||| | || ||||| | |||| | |||| |||||||| |||||||| ||||||||| |
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| T |
17642991 |
ggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagt |
17642892 |
T |
|
| Q |
145 |
tt |
146 |
Q |
| |
|
|| |
|
|
| T |
17642891 |
tt |
17642890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 1481684 - 1481836
Alignment:
| Q |
86 |
aagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatc |
185 |
Q |
| |
|
|||||||||| |||||||| |||||| |||||||||| || | |||||||||||||||||| || |||||| | |||||||| || ||||| ||||| |
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|
| T |
1481684 |
aagctcgcaagccattagcgggaaggttgagttggtttgagatattgagcgatgtgagttt---caatgggaaacaggagatttgggtgagaagcgcatc |
1481780 |
T |
|
| Q |
186 |
gaggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaacctttgta |
241 |
Q |
| |
|
||||| | || ||| | || ||||| | |||||||| |||||||||||||||| |
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|
| T |
1481781 |
gaggttaaagtagtagaaggaaaggtcaaaagaggtgagattggtgaacctttgta |
1481836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 8186441 - 8186317
Alignment:
| Q |
19 |
tcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagtt |
118 |
Q |
| |
|
||||||||||| | ||| | || ||||||||| | |||||||||||||||||||| || || |||| | ||||||| ||||| ||||||| | || ||| |
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|
| T |
8186441 |
tcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtt |
8186342 |
T |
|
| Q |
119 |
ggttggaaagattgagcgatgtgag |
143 |
Q |
| |
|
||| || |||||||| |||||||| |
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|
| T |
8186341 |
tgttagagagattgagtgatgtgag |
8186317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 661855 - 661947
Alignment:
| Q |
42 |
gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag |
134 |
Q |
| |
|
|||| ||||||| || ||||| ||||||||||| | | ||||||||||||||||||||||| |||| | || ||||||||| |||||||| |
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|
| T |
661855 |
gttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgag |
661947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 55907734 - 55907634
Alignment:
| Q |
42 |
gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg |
141 |
Q |
| |
|
|||||||||||| || || ||||||||||||| || | ||||||||||| || ||| |||| || | ||| |||||||||| ||||||||||| ||| |
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|
| T |
55907734 |
gttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg |
55907635 |
T |
|
| Q |
142 |
a |
142 |
Q |
| |
|
| |
|
|
| T |
55907634 |
a |
55907634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7132323 - 7132406
Alignment:
| Q |
63 |
caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt |
146 |
Q |
| |
|
||||||||||||||| | |||||||||||||| ||||| ||||||| | || |||||||||| | | | |||||||||||||| |
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|
| T |
7132323 |
caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt |
7132406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7135246 - 7135329
Alignment:
| Q |
63 |
caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt |
146 |
Q |
| |
|
||||||||||||||| | |||||||||||||| ||||| ||||||| | || |||||||||| | | | |||||||||||||| |
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|
| T |
7135246 |
caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt |
7135329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7138169 - 7138252
Alignment:
| Q |
63 |
caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt |
146 |
Q |
| |
|
||||||||||||||| | |||||||||||||| ||||| ||||||| | || |||||||||| | | | |||||||||||||| |
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|
| T |
7138169 |
caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt |
7138252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 8913479 - 8913375
Alignment:
| Q |
42 |
gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg |
141 |
Q |
| |
|
|||||||||| | || ||||||||||||||||| || ||| ||| || |||| ||||||||||||| | | ||||||||| | ||||||||||||| |
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|
| T |
8913479 |
gttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatgtg |
8913380 |
T |
|
| Q |
142 |
agttt |
146 |
Q |
| |
|
||||| |
|
|
| T |
8913379 |
agttt |
8913375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 6403548 - 6403636
Alignment:
| Q |
15 |
gagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattag |
103 |
Q |
| |
|
||||| || |||||||||||||| || || ||||||| ||| ||||||||||| || | || || |||||||||||||| ||||||| |
|
|
| T |
6403548 |
gagatgagagctattaagagaatcaatgtcggaacaatcaagagaggtcaaagtagtgacctttcgggagaaagctcgcaacccattag |
6403636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 1036670 - 1036570
Alignment:
| Q |
42 |
gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg |
141 |
Q |
| |
|
|||||||||||| || || |||||||||||||| || | ||||||||||| || ||| |||| || | ||| |||||||||| ||||||||||| ||| |
|
|
| T |
1036670 |
gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg |
1036571 |
T |
|
| Q |
142 |
a |
142 |
Q |
| |
|
| |
|
|
| T |
1036570 |
a |
1036570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 30827961 - 30827994
Alignment:
| Q |
205 |
gagaggtcgagggaggtgagtttggtgaaccttt |
238 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
30827961 |
gagaggtcgagggaggtgagattggtgaaccttt |
30827994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 7555196 - 7555280
Alignment:
| Q |
43 |
ttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaa |
127 |
Q |
| |
|
||||||||| | |||||||| ||||||||||| || | |||||||||||||| ||| | ||||| | | || |||||||||||| |
|
|
| T |
7555196 |
ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaa |
7555280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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