View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16505_low_17 (Length: 290)
Name: NF16505_low_17
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 26029553 - 26029833
Alignment:
| Q |
1 |
atgatgaatattaatagttttttgtaaaatgaaaattttgaattttgtctctaggctggatatagacacattgacactgctgctcagtatggagttcaag |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26029553 |
atgatgaatattaatagtttt-tgtaaaatgaaaattttgaattttgtctttaggctggatatagacatattgacactgctgctcagtatggagttcaag |
26029651 |
T |
|
| Q |
101 |
aagaggtatatatatcatatgctttctgtttcata-taagttttaatttgttgattctggatataaattaaaaaataaataaatctgaattaatacgtta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26029652 |
aagaggtatatatatcatatgctttctgtttcatattaagttttaatttgttgattctggatataaattaaaaaataaataaatctgaattaatacgtta |
26029751 |
T |
|
| Q |
200 |
ctacaagattatagtatat-----taaagtgattagtttcatataaa-agatagatgatgaaccaacaatagaatgatccaa |
275 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26029752 |
ctacaagattatagtatattaaagtaaagtgattagtttcatataaagagatagatgatgaaccaacaatagaatgatccaa |
26029833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University