View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16505_low_19 (Length: 240)
Name: NF16505_low_19
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 4290023 - 4289797
Alignment:
| Q |
16 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
115 |
Q |
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| T |
4290023 |
gaatctcatgctgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4289924 |
T |
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| Q |
116 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
206 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289923 |
cttctgttttggctcttcaagttaccatttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4289824 |
T |
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| Q |
207 |
ttttatcaaatcttgggcttacctatg |
233 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4289823 |
ttttatcaaatcttgggcttacctatg |
4289797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 4260154 - 4260380
Alignment:
| Q |
16 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
115 |
Q |
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||||||||||||| |||||||||||| |||| |||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
4260154 |
gaatctcatgctgatttcaatcatttctctggtaagaatctttctgaagctacacagattcatgattttttacctaacttgaatatttctcatgatcaag |
4260253 |
T |
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| Q |
116 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
206 |
Q |
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|| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260254 |
cttcttttttggctcttcaagttactttttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4260353 |
T |
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| Q |
207 |
ttttatcaaatcttgggcttacctatg |
233 |
Q |
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| T |
4260354 |
ttttatcaaatcttgggcttacctatg |
4260380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 4285294 - 4285109
Alignment:
| Q |
15 |
agaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4285294 |
agaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaa |
4285195 |
T |
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| Q |
115 |
gctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatgg |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
4285194 |
gctactgttttggctcttcaagttactgtttttccaaactatggattttcaatgggcattacttcacatcatgctgttttagatgg |
4285109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 4298607 - 4298381
Alignment:
| Q |
16 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
115 |
Q |
| |
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|||||| || ||| ||||||| || |||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4298607 |
gaatctgattctgatttcaattatctatctggtaagaatccttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4298508 |
T |
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| Q |
116 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
206 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298507 |
cttatgttttggctcttcaagttaccgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4298408 |
T |
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| Q |
207 |
ttttatcaaatcttgggcttacctatg |
233 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4298407 |
ttttatcaaatcttgggcttacctatg |
4298381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 4265700 - 4265926
Alignment:
| Q |
16 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
115 |
Q |
| |
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|||||| |||||| |||||||||| | || | |||||||||| | ||||| | |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4265700 |
gaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4265799 |
T |
|
| Q |
116 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
206 |
Q |
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|| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265800 |
cttctattttggctcttcaagttactctttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4265899 |
T |
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| Q |
207 |
ttttatcaaatcttgggcttacctatg |
233 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
4265900 |
ttttatcaaatcttgggcttacctatg |
4265926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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