View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16505_low_24 (Length: 216)

Name: NF16505_low_24
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16505_low_24
NF16505_low_24
[»] chr1 (1 HSPs)
chr1 (18-199)||(9111632-9111833)
[»] chr6 (2 HSPs)
chr6 (35-114)||(4845943-4846023)
chr6 (154-196)||(4846055-4846097)
[»] chr8 (1 HSPs)
chr8 (37-94)||(41739972-41740029)
[»] scaffold0076 (2 HSPs)
scaffold0076 (52-105)||(6910-6964)
scaffold0076 (126-183)||(7006-7062)
[»] chr4 (2 HSPs)
chr4 (154-196)||(895325-895367)
chr4 (31-68)||(895382-895419)
[»] chr3 (2 HSPs)
chr3 (36-68)||(16366508-16366540)
chr3 (140-196)||(16366541-16366598)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 9111632 - 9111833
Alignment:
Q  18 aatcatatcagaggtaaccaggaagaaaaattgggaagaaagaaagagtttttgtgttggtggaaaagtggtattttctgatcaagaattgtttcccaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9111632 aatcatatcagaggtaaccaggaagaaaaattgggaagaaagaaagagtttttgtgttggtggaaaagtggtattttctgatcaagaagtgtttcccaaa 9111731  T
Q  118 ttctaaaa--------------------atgcttctggtaaaaagcgtgcttcagctattgtccatcgtaaaaagcactatgttattatcatatatactt 197  Q
    ||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9111732 ttctaaaaagaaagtatatattttgggtatgcttctggtaaaaagcgtgcttcagctattgtccatcgtaaaaagcactgtgttattatcatatatactt 9111831  T
Q  198 cc 199  Q
    ||    
T  9111832 cc 9111833  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 4845943 - 4846023
Alignment:
Q  35 ccaggaagaaaaattgggaagaaagaaagagtttttgtgttggtggaaaagtggta-ttttctgatcaagaattgtttccc 114  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  4845943 ccaggaagaaaaattgggaagaaagaaagagcttttgtgttggtggaaaagtggtatttttctgatcaagaagtgtctccc 4846023  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 4846055 - 4846097
Alignment:
Q  154 tattgtccatcgtaaaaagcactatgttattatcatatatact 196  Q
    |||||||||| |||||||| ||||| |||||||||||||||||    
T  4846055 tattgtccattgtaaaaagtactatcttattatcatatatact 4846097  T

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Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 41739972 - 41740029
Alignment:
Q  37 aggaagaaaaattgggaagaaagaaagagtttttgtgttggtggaaaagtggtatttt 94  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41739972 aggaagaaaaattgagaagaaagaaagagtttttgtgttggtggaaaagtggtatttt 41740029  T

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Target: scaffold0076 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 6910 - 6964
Alignment:
Q  52 gaagaaagaaagagtttttgtgttggtggaaaagtggta-ttttctgatcaagaa 105  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  6910 gaagaaaaaaagagtttttatgttggtggaaaagtggtatttttctgatcaagaa 6964  T

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Target: scaffold0076; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 7006 - 7062
Alignment:
Q  126 atgcttctggtaaaaagcgtgcttcagctattgtccatcgtaaaaagcactatgttat 183  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||    
T  7006 atgcttctggtaaaa-gcgtgcttctggtattgtccatcgtaaaaagcactatcttat 7062  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 895367 - 895325
Alignment:
Q  154 tattgtccatcgtaaaaagcactatgttattatcatatatact 196  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  895367 tattgtccatagtaaaaaacactatgttattatcatatatact 895325  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 895419 - 895382
Alignment:
Q  31 gtaaccaggaagaaaaattgggaagaaagaaagagttt 68  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  895419 gtaactaggaagaaaaattgggaagaaagaaagtgttt 895382  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 16366508 - 16366540
Alignment:
Q  36 caggaagaaaaattgggaagaaagaaagagttt 68  Q
    |||||||||||||||||||||||||||||||||    
T  16366508 caggaagaaaaattgggaagaaagaaagagttt 16366540  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 16366541 - 16366598
Alignment:
Q  140 aagcgtgcttcagctattgtccatcgtaaaaag-cactatgttattatcatatatact 196  Q
    |||||||||| |  ||||||||||||||||||  ||||| ||||||||||||||||||    
T  16366541 aagcgtgcttgatgtattgtccatcgtaaaaaaacactacgttattatcatatatact 16366598  T

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