View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16505_low_3 (Length: 601)
Name: NF16505_low_3
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 592
Target Start/End: Original strand, 27450065 - 27450659
Alignment:
| Q |
19 |
ggctattccaaaacttagtgtgcatggcatggtttctgcagtgaaagatcttttagagcaggctccattaaacaaggtattcaaaaagtaatacaactaa |
118 |
Q |
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| T |
27450065 |
ggctattccaaagcttagtgtgcatggcatggtttctgcagtgaaagatcttttagagcaggctccattaaacaaggtatccaaaaagtaatacaactaa |
27450164 |
T |
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| Q |
119 |
aaatttggtatgaagcaactgatgaagtgaccaaaatatttcggtctaatttacatcgatttgaaaagccggtttctatata------------agtccc |
206 |
Q |
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| T |
27450165 |
aaatttggtatgtagcaactgattaaatgaccaaaatatttcggtctaatttacatcgatttgaaaagccggtttctaaataagtcgctaaatcagtccc |
27450264 |
T |
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| Q |
207 |
aaaatgagtttgtgaccggtttaaagaacgatttatgaaatgcctatatatcatttctccctaattttagtggccagtttagaaactaatttggtatttt |
306 |
Q |
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| T |
27450265 |
gaaatgagtttgtgtctggttcaaagatcgatttatgaaaagcctatacatcattgctccctaattttagtgaccaatttagaaactaatttggtatttt |
27450364 |
T |
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| Q |
307 |
ttgcctct-aatctgttgctaacttggttactatagagctannnnnnnnnagtattaatagttttccttccttaaacttt------agttcaagtggttt |
399 |
Q |
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|||||| | |||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||| ||||||||| |||| |
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| T |
27450365 |
ttgcctgtaaatctgttgctaacttggttactatagagctatttttttgtattattaattctttaccttccttaaacttttcttagagttcaagtagttt |
27450464 |
T |
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| Q |
400 |
aaaataatatgaggctcactagatgtagt-nnnnnnnncacaaatga-attttttgttatttcaaaatggtttatccacaaataacagaattttaatatc |
497 |
Q |
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| T |
27450465 |
aaaataatgtgaggctcactagatgtagtaaaaaaaaacacaaatgagtttttttgttatttcaaaatggtttatccacaaataacagaattttaatatc |
27450564 |
T |
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| Q |
498 |
ctttaactttgaacaaacaaagaaaacttatacatttcatgtctaacaagagaaaactttgcactgcaggtgatgtttagtaccgatgcctatgc |
592 |
Q |
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| T |
27450565 |
ctttaactgtgaataatcaaagaaaacttatacattcaatgtctaataagagaaaactttgcactgcaggtgatgtttagtaccgatgcctatgc |
27450659 |
T |
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