View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16505_low_4 (Length: 591)

Name: NF16505_low_4
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16505_low_4
NF16505_low_4
[»] scaffold0002 (3 HSPs)
scaffold0002 (1-395)||(133926-134320)
scaffold0002 (17-408)||(143961-144352)
scaffold0002 (17-408)||(152266-152657)
[»] chr3 (51 HSPs)
chr3 (1-395)||(13172668-13173062)
chr3 (17-408)||(13334560-13334951)
chr3 (17-408)||(13162636-13163027)
chr3 (1-395)||(13345723-13346117)
chr3 (363-553)||(10262703-10262893)
chr3 (363-550)||(10197678-10197865)
chr3 (363-536)||(10090796-10090969)
chr3 (356-553)||(10582608-10582803)
chr3 (356-553)||(10431918-10432115)
chr3 (363-553)||(10361678-10361865)
chr3 (363-553)||(10128930-10129117)
chr3 (363-553)||(10519490-10519677)
chr3 (23-154)||(10128584-10128715)
chr3 (356-528)||(11779884-11780053)
chr3 (356-553)||(9851737-9851931)
chr3 (23-154)||(10033659-10033790)
chr3 (23-154)||(10090449-10090580)
chr3 (23-154)||(10197332-10197463)
chr3 (23-154)||(10262357-10262488)
chr3 (363-553)||(9840863-9841050)
chr3 (23-151)||(11158299-11158427)
chr3 (363-553)||(10034005-10034195)
chr3 (363-553)||(10373719-10373909)
chr3 (26-154)||(10582272-10582400)
chr3 (23-154)||(8862945-8863076)
chr3 (23-154)||(11147133-11147264)
chr3 (356-500)||(10079408-10079549)
chr3 (24-154)||(10890966-10891096)
chr3 (23-153)||(11770893-11771023)
chr3 (356-528)||(11771232-11771401)
chr3 (23-154)||(10079069-10079200)
chr3 (23-154)||(10186039-10186170)
chr3 (356-500)||(10186378-10186519)
chr3 (356-499)||(10665524-10665658)
chr3 (23-153)||(11780262-11780392)
chr3 (27-152)||(10362082-10362207)
chr3 (26-154)||(11129308-11129436)
chr3 (23-150)||(10502245-10502372)
chr3 (375-527)||(10502600-10502749)
chr3 (26-212)||(13397148-13397337)
chr3 (23-154)||(10374124-10374255)
chr3 (23-151)||(10665185-10665313)
chr3 (23-154)||(9851398-9851529)
chr3 (23-154)||(10432323-10432454)
chr3 (23-154)||(10519144-10519275)
chr3 (63-154)||(10530346-10530437)
chr3 (23-153)||(12130061-12130191)
chr3 (23-154)||(9840520-9840651)
chr3 (63-154)||(10679137-10679228)
chr3 (370-439)||(11129020-11129089)
chr3 (370-442)||(10530659-10530731)
[»] scaffold0083 (2 HSPs)
scaffold0083 (363-553)||(55479-55666)
scaffold0083 (23-156)||(55879-56012)
[»] chr2 (2 HSPs)
chr2 (356-553)||(26908886-26909080)
chr2 (23-154)||(26908547-26908678)
[»] chr8 (4 HSPs)
chr8 (23-151)||(11486694-11486822)
chr8 (26-153)||(44955957-44956084)
chr8 (365-490)||(11487042-11487164)
chr8 (372-442)||(44955662-44955732)
[»] chr4 (1 HSPs)
chr4 (26-154)||(17851205-17851333)
[»] chr1 (2 HSPs)
chr1 (26-150)||(827555-827679)
chr1 (363-410)||(827895-827942)
[»] chr6 (1 HSPs)
chr6 (106-189)||(31677977-31678060)
[»] chr7 (1 HSPs)
chr7 (37-154)||(29838313-29838430)


Alignment Details
Target: scaffold0002 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 134320 - 133926
Alignment:
Q  1 cctgaggaaactgtgcattaggttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttat 100  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |  ||    
T  134320 cctgaggaaactgagcattagcttgtatggtgggacaagctttccgagttggttgggtgatccttttttttctaacatggtgtccttgtgtatctcgaat 134221  T
Q  101 tgtgaatattgtgtaacacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttct 200  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134220 tgtgaatattgtgtaacacttccatcactaggtcaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttct 134121  T
Q  201 atgggatgacagtagaaccctccatttcttcattccaaccatttcaatctctcgagtctttaacattctttagcgtgccgaattggaaggaatggataca 300  Q
    |||| |||||||||||||| |||| |||||||||| |||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  134120 atggcatgacagtagaaccttccacttcttcattcaaaccatttcagtatctcgagtctttaaaattctttagcatgccgaattggaaggaatggataca 134021  T
Q  301 tcatggaagtggtgagtttggttttcctcgccttagaaatttgtccttagtggaatgtcctaaactaaagggacatttgcctagccatcttcctt 395  Q
      ||| ||||||||| |||||||||||||||||||||| ||||  ||||    ||||||||||||||| |||  |||||||||||  ||||||||    
T  134020 ctatgaaagtggtgaatttggttttcctcgccttagaactttgcgcttaagccaatgtcctaaactaagggggaatttgcctagcagtcttcctt 133926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 144352 - 143961
Alignment:
Q  17 attaggttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaa 116  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |  ||||||||||||||||||    
T  144352 attaggttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaa 144253  T
Q  117 cacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttctatgggatgacagtaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  144252 cacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttctatgggatgacagtaga 144153  T
Q  217 accctccatttcttcattccaaccatttcaatctctcgagtctttaacattctttagcgtgccgaattggaaggaatggatacatcatggaagtggtgag 316  Q
    ||| |||||||| | ||||| |||||||||||||||||||||||||  | |||  ||  ||||||||||||| |||||||||||  ||| || || ||||    
T  144152 accttccatttccttattccgaccatttcaatctctcgagtctttacaaatctccagtatgccgaattggaaagaatggatacactatgaaaatgatgag 144053  T
Q  317 tttggttttcctcgccttagaaatttgtccttagtggaatgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaat 408  Q
    |||  ||||||||||||||||| ||||| ||||    ||||||||||||||||||||||||||||||||  ||||||||  ||||| |||||    
T  144052 tttaattttcctcgccttagaactttgtgcttaagccaatgtcctaaactaaagggacatttgcctagcagtcttccttcaatagatgaaat 143961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 152657 - 152266
Alignment:
Q  17 attaggttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaa 116  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| |  ||||||||||||||||||    
T  152657 attaggttgtatggtggaacaagcttcccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaa 152558  T
Q  117 cacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttctatgggatgacagtaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  152557 cacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttctatgggatgacagtaga 152458  T
Q  217 accctccatttcttcattccaaccatttcaatctctcgagtctttaacattctttagcgtgccgaattggaaggaatggatacatcatggaagtggtgag 316  Q
    ||| |||||||| | ||||| |||||||||||||||||||||||||  | |||  ||  ||||||||||||| |||||||||||  ||| || || ||||    
T  152457 accttccatttcattattccgaccatttcaatctctcgagtctttacaaatctcaagtatgccgaattggaaagaatggatacactatgaaaatgatgag 152358  T
Q  317 tttggttttcctcgccttagaaatttgtccttagtggaatgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaat 408  Q
    |||  ||||||||||||||||| ||||| ||||    ||||||||||||||||||||||||||||||||  ||||||||  ||||| |||||    
T  152357 tttaattttcctcgccttagaactttgtgcttaagccaatgtcctaaactaaagggacatttgcctagcagtcttccttcaatagatgaaat 152266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 51)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 13172668 - 13173062
Alignment:
Q  1 cctgaggaaactgtgcattaggttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttat 100  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |  ||    
T  13172668 cctgaggaaactgagcattagcttgtatggtgggacaagctttccgagttggttgggtgatccttttttttctaacatggtgtccttgtgtatctcgaat 13172767  T
Q  101 tgtgaatattgtgtaacacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttct 200  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13172768 tgtgaatattgtgtaacacttccatcactaggtcaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttct 13172867  T
Q  201 atgggatgacagtagaaccctccatttcttcattccaaccatttcaatctctcgagtctttaacattctttagcgtgccgaattggaaggaatggataca 300  Q
    |||| |||||||||||||| |||| |||||||||| |||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  13172868 atggcatgacagtagaaccttccacttcttcattcaaaccatttcagtatctcgagtctttaaaattctttagcatgccgaattggaaggaatggataca 13172967  T
Q  301 tcatggaagtggtgagtttggttttcctcgccttagaaatttgtccttagtggaatgtcctaaactaaagggacatttgcctagccatcttcctt 395  Q
      ||| ||||||||| |||||||||||||||||||||| ||||  ||||    ||||||||||||||| |||  |||||||||||  ||||||||    
T  13172968 ctatgaaagtggtgaatttggttttcctcgccttagaactttgcgcttaagccaatgtcctaaactaagggggaatttgcctagcagtcttcctt 13173062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 13334560 - 13334951
Alignment:
Q  17 attaggttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaa 116  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |  ||||||||||||||||||    
T  13334560 attaggttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaa 13334659  T
Q  117 cacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttctatgggatgacagtaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13334660 cacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttctatgggatgacagtaga 13334759  T
Q  217 accctccatttcttcattccaaccatttcaatctctcgagtctttaacattctttagcgtgccgaattggaaggaatggatacatcatggaagtggtgag 316  Q
    ||| |||||||| | ||||| |||||||||||||||||||||||||  | |||  ||  ||||||||||||| |||||||||||  ||| || || ||||    
T  13334760 accttccatttccttattccgaccatttcaatctctcgagtctttacaaatctccagtatgccgaattggaaagaatggatacactatgaaaatgatgag 13334859  T
Q  317 tttggttttcctcgccttagaaatttgtccttagtggaatgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaat 408  Q
    |||  ||||||||||||||||| ||||| ||||    ||||||||||||||||||||||||||||||||  ||||||||  ||||| |||||    
T  13334860 tttaattttcctcgccttagaactttgtgcttaagccaatgtcctaaactaaagggacatttgcctagcagtcttccttcaatagacgaaat 13334951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 13162636 - 13163027
Alignment:
Q  17 attaggttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaa 116  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| |  ||||||||||||||||||    
T  13162636 attaggttgtatggtggaacaagcttcccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaa 13162735  T
Q  117 cacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttctatgggatgacagtaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13162736 cacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttctatgggatgacagtaga 13162835  T
Q  217 accctccatttcttcattccaaccatttcaatctctcgagtctttaacattctttagcgtgccgaattggaaggaatggatacatcatggaagtggtgag 316  Q
    ||| |||||||| | ||||| |||||||||||||||||||||||||  | |||  ||  ||||||||||||| |||||||||||  ||| || || ||||    
T  13162836 accttccatttcattattccgaccatttcaatctctcgagtctttacaaatctcaagtatgccgaattggaaagaatggatacactatgaaaatgatgag 13162935  T
Q  317 tttggttttcctcgccttagaaatttgtccttagtggaatgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaat 408  Q
    |||  ||||||||||||||||| ||||| ||||    ||||||||||||||||||||||||||||||||  ||||||||  ||||| |||||    
T  13162936 tttaattttcctcgccttagaactttgtgcttaagccaatgtcctaaactaaagggacatttgcctagcagtcttccttcaatagatgaaat 13163027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 13345723 - 13346117
Alignment:
Q  1 cctgaggaaactgtgcattaggttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttat 100  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |  ||    
T  13345723 cctgaggaaactgagcattcggttgtatggtgggacaagctttccgagttggttgggtgatccattgttttctaacatggtgtccttgtgtatctcgaat 13345822  T
Q  101 tgtgaatattgtgtaacacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgggctagagttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  13345823 tgtgaatattgtgtaacacttccaccactaggccaactaccttctctcaaggacttgactattaagggtatgacaatggaaacaattgggctggagttct 13345922  T
Q  201 atgggatgacagtagaaccctccatttcttcattccaaccatttcaatctctcgagtctttaacat-tctttagcgtgccgaattggaaggaatggatac 299  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| |||| ||| |    ||||||||||||||||||||| ||    
T  13345923 atgggatgacagtagaaccttccatttcttcattccaaccatttcaatctctcgag-attttacatatctctgatatgccgaattggaaggaatggaaac 13346021  T
Q  300 atcatggaagtggtgagtttggttttcctcgccttagaaatttgtccttagtggaatgtcctaaactaaagggacatttgcctagccatcttcctt 395  Q
    |  ||| ||||||||| ||||||||||||||||||||||  |||   ||| |  ||||||||||||||| ||||||||||||| || |||||||||    
T  13346022 actatgaaagtggtgaatttggttttcctcgccttagaatattgaggttaatccaatgtcctaaactaaggggacatttgcctggcaatcttcctt 13346117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 363 - 553
Target Start/End: Original strand, 10262703 - 10262893
Alignment:
Q  363 aactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattg 462  Q
    |||||| || ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10262703 aactaagggaacatttgcctagcaaacttccttgcatagaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattg 10262802  T
Q  463 gttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |||||||    
T  10262803 gttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaa 10262893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 363 - 550
Target Start/End: Original strand, 10197678 - 10197865
Alignment:
Q  363 aactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattg 462  Q
    |||||| |||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10197678 aactaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattg 10197777  T
Q  463 gttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagattatccgagtaagatg 550  Q
    |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| |||| |||| ||| ||||    
T  10197778 gttgtcgtcagtaaagaaaattaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccgtgtatgatg 10197865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 363 - 536
Target Start/End: Original strand, 10090796 - 10090969
Alignment:
Q  363 aactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattg 462  Q
    |||||| |||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10090796 aactaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattg 10090895  T
Q  463 gttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagatt 536  Q
    |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| ||||    
T  10090896 gttgtcgtcagtaaagaaaattaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgatt 10090969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 356 - 553
Target Start/End: Original strand, 10582608 - 10582803
Alignment:
Q  356 tgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactt 455  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||  |||||||||||||||||||||   |||||    
T  10582608 tgtcccaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgaaatagaaggttgtgttcatctattggaaacagagcc---cactt 10582704  T
Q  456 tgcattggttgtcgtcagt-aaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    ||||||||||||||||| | ||| |||||||| || |||||||||| || |||||||||||||| |||||||||||| |||| |||| ||| |||||||    
T  10582705 tgcattggttgtcgtcaataaaaaaaaattaagattgatgggcttggtgaaaggacccaattgttattgcttgagagtgattctccgtgtatgatgcaa 10582803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 356 - 553
Target Start/End: Complemental strand, 10432115 - 10431918
Alignment:
Q  356 tgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactt 455  Q
    |||||| |||||| |||||| ||||||||| | ||||||||||||||||||||||  |||  ||| |||||||| ||| ||||||||||||||||||||     
T  10432115 tgtcctgaactaaggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactactggaaacagagccaaacacta 10432016  T
Q  456 tgcattggttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||| | ||||||||||||||||| |||| |||| ||| |||||||    
T  10432015 tgcattggttgtcgtcaataaagaaagttaatatcaatgggcttgacggaaggaccaatttgtcattgcttgagagtgattctccgtgtatgatgcaa 10431918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 363 - 553
Target Start/End: Complemental strand, 10361865 - 10361678
Alignment:
Q  363 aactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattg 462  Q
    |||||| |||||||||||| ||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||   ||||||||||||    
T  10361865 aactaaggggacatttgccgagcaaccttccttgcatagaagaaattgtaatacaaggttgttctcatctattggaaacagagcc---cactttgcattg 10361769  T
Q  463 gttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    |||||||||| |||| ||  |||| || |||||||||||||||||||||||||||||||| |||| ||| |||| |||  ||| |||||||    
T  10361768 gttgtcgtcaataaaaaattttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagcgattctccatgtatgatgcaa 10361678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 363 - 553
Target Start/End: Original strand, 10128930 - 10129117
Alignment:
Q  363 aactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattg 462  Q
    |||||| |||||||||||| | | | ||||||| |||||||||||||||||||  ||| |||||||||||||||||||||   |||   ||| |||||||    
T  10128930 aactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattg 10129026  T
Q  463 gttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    |||||| ||| |||| ||||| |||||| ||||||||| || |||  |||||||||||||||||||||| |||| |||| ||| |||||||    
T  10129027 gttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaa 10129117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 363 - 553
Target Start/End: Original strand, 10519490 - 10519677
Alignment:
Q  363 aactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattg 462  Q
    |||||| |||||||||||| | | | ||||||| |||||||||||||||||||||||| |||  ||||||||||||||||   |||   |||||||||||    
T  10519490 aactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaataaaaggttgtgttcatctattggaaaca---ccatctactttgcattg 10519586  T
Q  463 gttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    |||||| ||| |||| ||||| |||||| ||||||||| || |||  |||||||||||||||||||||| |||| |||  ||| |||||||    
T  10519587 gttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccttgtatgatgcaa 10519677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 10128584 - 10128715
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||| ||  |||||||| || |||||||||||||| | |||||||    
T  10128584 ttgtatggtgggacaagctttccgagttggttgggaaattctttgttttctaacatggtatctctgcgcatcactaattgtgaatattgtatgacacttc 10128683  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    ||||  |||| ||  |||||||||||||||||    
T  10128684 cacccatagggcagttaccttctctcaaggac 10128715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 356 - 528
Target Start/End: Complemental strand, 11780053 - 11779884
Alignment:
Q  356 tgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactt 455  Q
    |||||| |||||| |||||||||||||| | | ||||||||||| |||||||||||||||||||| |||||||||||||||||||   | |||   ||||    
T  11780053 tgtcctgaactaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaa---aaccatctactt 11779957  T
Q  456 tgcattggttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttga 528  Q
    ||||||||||||||||| ||||  |||| |||||| | || |||| || || ||| |||||||||||||||||    
T  11779956 tgcattggttgtcgtcaataaaagaaatgaatatcaaaggacttggtgaaaagacacaattgtcattgcttga 11779884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 356 - 553
Target Start/End: Original strand, 9851737 - 9851931
Alignment:
Q  356 tgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactt 455  Q
    ||||| ||||||| |||| ||||||| | | | ||||||| |||||||||||||||||||  ||| |||||||||||||||||||||   |||   |||     
T  9851737 tgtccaaaactaaggggatatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactc 9851833  T
Q  456 tgcattggttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    ||| ||||||||| ||| |||| ||||| |||||| ||||||||| || |||  |||||||||||||||||||||| |||| |||| ||| |||||||    
T  9851834 tgcgttggttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaa 9851931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 10033659 - 10033790
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||| ||  | |||||| || |||||||||||||| | |||||||    
T  10033659 ttgtatggtgggacaagctttccgagttggttgggaaattctttgttttctaacatggtatctcttcgcatcactaattgtgaatattgtatgacacttc 10033758  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    ||||  |||| ||  |||||||||||||||||    
T  10033759 cacccatagggcagttaccttctctcaaggac 10033790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 10090449 - 10090580
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    |||||||||||||||||||||||||||||||||||  || ||| ||||||||||||||| ||| |  | |||  | |||||||||||||||| |||||||    
T  10090449 ttgtatggtgggacaagctttccgagttggttgggaaattcttcgttttctaacatggtatccctctgtatcagtaattgtgaatattgtgtgacacttc 10090548  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    ||||  |||| ||| |||||||||||||||||    
T  10090549 cacccataggtcaattaccttctctcaaggac 10090580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 10197332 - 10197463
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    |||||||||||||||||||||||||||||||||||  || ||| ||||||||||||||| ||| |  | |||  | |||||||||||||||| |||||||    
T  10197332 ttgtatggtgggacaagctttccgagttggttgggaaattcttcgttttctaacatggtatccctctgtatcagtaattgtgaatattgtgtgacacttc 10197431  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    ||||  |||| ||| |||||||||||||||||    
T  10197432 cacccataggtcaattaccttctctcaaggac 10197463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 10262357 - 10262488
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    |||||||||||||||||||||||||||||||||||  || ||| ||||| ||||||||| ||  |||||||| || |||||||||||||| | |||||||    
T  10262357 ttgtatggtgggacaagctttccgagttggttgggaaattcttcgttttataacatggtatctctgcgcatcactaattgtgaatattgtatgacacttc 10262456  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    ||||  |||| ||  |||||||||||||||||    
T  10262457 cacccatagggcagttaccttctctcaaggac 10262488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 363 - 553
Target Start/End: Original strand, 9840863 - 9841050
Alignment:
Q  363 aactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattg 462  Q
    |||||| |||| ||||||| | | | ||||||| ||||||| |||||||||||  ||| |||||||||||||||||||||   |||   ||| |||||||    
T  9840863 aactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattg 9840959  T
Q  463 gttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    |||||| ||| |||| ||||| |||||| ||||||||| || |||  |||||||||||||||||||||| |||| |||  ||| |||||||    
T  9840960 gttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccatgtatgatgcaa 9841050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 11158427 - 11158299
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||||||||||||||||||| ||||||||||| ||| |||  |||||||||||||||||  |  |||| |   |||||| |||||||||||||||||    
T  11158427 ttgtatggtgggacaagctttccaagttggttgggagattcttcattttctaacatggtgtcacttagcatagaaaattgtggatattgtgtaacacttc 11158328  T
Q  123 caccactaggccaactaccttctctcaag 151  Q
    |||||||||| |||||| || ||||||||    
T  11158327 caccactaggacaactatctgctctcaag 11158299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 363 - 553
Target Start/End: Original strand, 10034005 - 10034195
Alignment:
Q  363 aactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattg 462  Q
    |||||| |||||||||||| | | | ||||||| ||||||| |||||||||||  ||| |||||||||||||||||||||   |||   ||| |||||||    
T  10034005 aactaaggggacatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattg 10034101  T
Q  463 gttgtcgtcagtaaagaaaattaatatcgatgggcttga---tggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    |||||| ||| |||| ||||| |||||| ||||||||||   || |||  ||||| |||||||||||||||| |||| |||| ||| |||||||    
T  10034102 gttgtcttcaataaaaaaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa 10034195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 363 - 553
Target Start/End: Complemental strand, 10373909 - 10373719
Alignment:
Q  363 aactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattg 462  Q
    |||||| |||||||||||| | | | ||||||| |||||||||||||||||||  ||| |||||||||||||||||||||   |||   ||| |||||||    
T  10373909 aactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattg 10373813  T
Q  463 gttgtcgtcagtaaagaaaattaatatcgatgggcttga---tggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    |||||| ||| ||||  |||| |||||| ||||||||||   || |||  ||||| |||||||||||||||| |||| |||| ||| |||||||    
T  10373812 gttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa 10373719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 10582272 - 10582400
Alignment:
Q  26 tatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttccac 125  Q
    ||||| |||||||| ||||| |||||||||||  || ||| ||||||||||||||| ||| | |||||| || |||||||||||||||| ||||||||||    
T  10582272 tatggcgggacaagttttcctagttggttgggaaattcttcgttttctaacatggtatccctccgcatcactaattgtgaatattgtgtgacacttccac 10582371  T
Q  126 cactaggccaactaccttctctcaaggac 154  Q
    || |||| ||  |||||||||| ||||||    
T  10582372 caatagggcagttaccttctcttaaggac 10582400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 8862945 - 8863076
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||| |||||||||||||||||  |||||||||| ||| |||  |||||||||||||||||  || |||| |   |||||| ||||||||| |||||||    
T  8862945 ttgtacggtgggacaagctttccatgttggttgggagattcttcattttctaacatggtgtcactgtgcattgaaaattgtggatattgtgtgacacttc 8863044  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    |||||||||| |||||| ||||||| ||||||    
T  8863045 caccactaggacaactatcttctctaaaggac 8863076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 11147264 - 11147133
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||||||||||||||||||| ||||||||||| ||| |||  |||||||||||||||||  ||   ||     |||||| ||||||||| |||||||    
T  11147264 ttgtatggtgggacaagctttccaagttggttgggagattcttcattttctaacatggtgtcactgtcaattcaacattgtggatattgtgtgacacttc 11147165  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    |||||||||| |||||| ||||||||||||||    
T  11147164 caccactaggacaactatcttctctcaaggac 11147133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 356 - 500
Target Start/End: Original strand, 10079408 - 10079549
Alignment:
Q  356 tgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactt 455  Q
    |||||| |||||||||| ||||| |||||| | ||||||||||||||||||||| | |||||||| ||| |  ||||||||||||||   |||   ||||    
T  10079408 tgtcctgaactaaaggggcattttcctagcgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggaaaca---ccacctactt 10079504  T
Q  456 tgcattggttgtcgtcagtaaagaaaattaatatcgatgggcttg 500  Q
    || |||||||| |||||||||| |||||||||||| |||| ||||    
T  10079505 tggattggttgccgtcagtaaaaaaaattaatatcaatggtcttg 10079549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 10890966 - 10891096
Alignment:
Q  24 tgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttcc 123  Q
    ||||||||||||||||||||||  ||||||| || ||| |||  |||||||||||||||||  || |||| |   |||||| ||||||||| ||||||||    
T  10890966 tgtatggtgggacaagctttccatgttggttaggagattcttcattttctaacatggtgtcactgtgcattgaaaattgtggatattgtgtgacacttcc 10891065  T
Q  124 accactaggccaactaccttctctcaaggac 154  Q
    ||||||||| | |||| ||||||||||||||    
T  10891066 accactaggacgactatcttctctcaaggac 10891096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 11770893 - 11771023
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    |||||||||||||||||||||||||||||| ||||  || |||  |||||||||||||| ||| | || ||   | |||||||||||||||| |||||||    
T  11770893 ttgtatggtgggacaagctttccgagttggctgggaaattcttcattttctaacatggtatccctccgtattagtaattgtgaatattgtgtgacacttc 11770992  T
Q  123 caccactaggccaactaccttctctcaagga 153  Q
    ||||  |||| || |||||||||||||||||    
T  11770993 cacccatagggcagctaccttctctcaagga 11771023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 356 - 528
Target Start/End: Original strand, 11771232 - 11771401
Alignment:
Q  356 tgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactt 455  Q
    |||||| |||||| || |||||| |||| | | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||   | |||   ||||    
T  11771232 tgtcctgaactaagggtacattttcctaccaaccttccttgcatcgaagaaattgtaatcaaaggttgttctcatctattggaaa---aaccatctactt 11771328  T
Q  456 tgcattggttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttga 528  Q
    ||||||||||||||||| ||||  |||| |||||| | || |||| || || ||| || ||||||||||||||    
T  11771329 tgcattggttgtcgtcaataaaagaaatgaatatcaacggccttggtgaaaagacacagttgtcattgcttga 11771401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 10079069 - 10079200
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||||||||||||||||| |||||||||| ||  || ||| ||||| |||| |||| ||| |    ||| || |||||||||||||||| | |||||    
T  10079069 ttgtatggtgggacaagcttttcgagttggttaggaaattcttcgttttgtaacttggtatccctcgtaatcactgattgtgaatattgtgtgatacttc 10079168  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    ||||||| || |||||||||||||||||||||    
T  10079169 caccacttgggcaactaccttctctcaaggac 10079200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 10186039 - 10186170
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||||||||||||||||| |||||||||| ||  || ||| ||||| |||| |||||||| |    ||| || |||||||||||||||  | |||||    
T  10186039 ttgtatggtgggacaagcttttcgagttggttaggaaattcttcgttttgtaacttggtgtccctcgtaatcactgattgtgaatattgtgcgatacttc 10186138  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    ||||||| || |||||||||||||||||||||    
T  10186139 caccacttgggcaactaccttctctcaaggac 10186170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 356 - 500
Target Start/End: Original strand, 10186378 - 10186519
Alignment:
Q  356 tgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactt 455  Q
    |||||| |||||||||| |||||||||||  | ||||||||||||||||||||| | |||||||| ||| |  |||||||||| |||   |||   ||||    
T  10186378 tgtcctgaactaaaggggcatttgcctagtgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggataca---ccacctactt 10186474  T
Q  456 tgcattggttgtcgtcagtaaagaaaattaatatcgatgggcttg 500  Q
    || |||||||| |||||||||| |||||||||||| |||| ||||    
T  10186475 tggattggttgccgtcagtaaaaaaaattaatatcaatggtcttg 10186519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 356 - 499
Target Start/End: Original strand, 10665524 - 10665658
Alignment:
Q  356 tgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactt 455  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||  ||||      || |||||| |||||||  ||   |||||    
T  10665524 tgtccaaaactaaagggacatttgcctagccatcttccttgtatagaagaaattgaaattgaagg------tcgtctattagaaacaggtcc---cactt 10665614  T
Q  456 tgcattggttgtcgtcagtaaagaaaattaatatcgatgggctt 499  Q
    ||||||||||||||||| |||| ||| |||| ||| ||||||||    
T  10665615 tgcattggttgtcgtcaataaaaaaagttaaaatcaatgggctt 10665658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 11780392 - 11780262
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||||||||||||||||||| |||||| ||||  ||||||  ||||| |||||||| ||| | || ||   | |||||||||||||||| |||||||    
T  11780392 ttgtatggtgggacaagctttccaagttggctgggaaatccttcattttcaaacatggtatccctccgtattagtaattgtgaatattgtgtgacacttc 11780293  T
Q  123 caccactaggccaactaccttctctcaagga 153  Q
    ||||  |||| || |||||||||||||||||    
T  11780292 cacccatagggcagctaccttctctcaagga 11780262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 10362207 - 10362082
Alignment:
Q  27 atggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttccacc 126  Q
    ||||||||||||| ||||| |||||||||||  || ||| ||||||||||||||| ||| | |||||| || |||||||||||||||| | |||||||||    
T  10362207 atggtgggacaagttttcctagttggttgggaaattcttcgttttctaacatggtatccctccgcatcactaattgtgaatattgtgtgatacttccacc 10362108  T
Q  127 actaggccaactaccttctctcaagg 152  Q
      |||| ||  |||||||||| ||||    
T  10362107 cttagggcagttaccttctctgaagg 10362082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 11129436 - 11129308
Alignment:
Q  26 tatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttccac 125  Q
    ||||| |||||||| ||||| ||||||||||| ||| |||  |||||||||||||||||  |  |||| |   |||||  ||||||||| ||||||||||    
T  11129436 tatggcgggacaagttttcctagttggttgggagattcttcattttctaacatggtgtcactttgcatagaaaattgtcgatattgtgtgacacttccac 11129337  T
Q  126 cactaggccaactaccttctctcaaggac 154  Q
    ||||||| |||||| ||||||||||||||    
T  11129336 cactaggacaactatcttctctcaaggac 11129308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 10502245 - 10502372
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    |||||| | |||||||||||||| | |||||||||  || ||| ||||||||||||||| ||| |   |||| || | |||||||||||||| |||||||    
T  10502245 ttgtatagcgggacaagctttccaaattggttgggaaattcttcgttttctaacatggtatccatcaacatcactaactgtgaatattgtgtgacacttc 10502344  T
Q  123 caccactaggccaactaccttctctcaa 150  Q
    ||||  |||| |||||||||||||||||    
T  10502345 caccgttagggcaactaccttctctcaa 10502372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 527
Target Start/End: Original strand, 10502600 - 10502749
Alignment:
Q  375 atttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagt 474  Q
    |||| ||| |||| ||| ||| ||||||||||||||||||| |||| ||| |||||||||||||||||  |||    |||||||||||| |||||||| |    
T  10502600 atttaccttgccacctttctttcatagaagaaattgtaatagaaggttgtgctcatctattggaaacaccgcc---tactttgcattggctgtcgtcatt 10502696  T
Q  475 aaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttg 527  Q
     || |||  ||||||| ||||||||| || || ||| ||||| ||||||||||    
T  10502697 gaaaaaaggtaatatcaatgggcttggtgaaaagactcaattatcattgcttg 10502749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 13397148 - 13397337
Alignment:
Q  26 tatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgt-ccttgcgcatcgcttattgtgaatattgtgtaacacttcca 124  Q
    |||||||||| ||||||||| ||||||||||| |||  || ||||||||||||||||| |||| | ||||   | |||||| |||||  ||||||||||     
T  13397148 tatggtgggataagctttccaagttggttgggggattgttcgttttctaacatggtgtacctttc-catcaaatcttgtgagtattgcataacacttcct 13397246  T
Q  125 ccactaggccaactaccttctctcaaggacttgactattgagggtatg---acaatggaaacaattgggctagagttctatgggatgacag 212  Q
    |||||||| ||| |||||| |||||| || ||||  || || ||||||   | | ||||||||||||| | |||||||||||| |||||||    
T  13397247 ccactaggacaagtaccttttctcaaagagttgaagatcgatggtatgagtagagtggaaacaattggcccagagttctatggcatgacag 13397337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 10374255 - 10374124
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    |||||||||||||||||||||||||||||||||||   | ||| ||||| ||||||||| ||  |  | |||  | |||||||| ||||||| |||||||    
T  10374255 ttgtatggtgggacaagctttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc 10374156  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    || | ||||| ||  |||||||||||||||||    
T  10374155 catccctagggcagttaccttctctcaaggac 10374124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 10665185 - 10665313
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||||||| ||||||||||| |||||||||||  || ||| ||||||||||||||| ||| |  | |||  | |||||||||||||||| | |||||    
T  10665185 ttgtatggtggaacaagctttccaagttggttgggaaattcttcgttttctaacatggtatccctctgtatcagtaattgtgaatattgtgtgatacttc 10665284  T
Q  123 caccactaggccaactaccttctctcaag 151  Q
    |||| || ||  |  ||||||||||||||    
T  10665285 caccccttgggaagttaccttctctcaag 10665313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 9851398 - 9851529
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||||||||||||| |||||||||||||||||   | ||| ||||| ||||||||| ||  |  | |||  | |||||||| ||||||| |||||||    
T  9851398 ttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc 9851497  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    || | ||||| ||  |||||||||||||||||    
T  9851498 catccctagggcagttaccttctctcaaggac 9851529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 10432454 - 10432323
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||| ||| |||||||||||||||||| ||||  || ||| ||||||  ||||||| ||| |  | |||  | |||||||||||||||| |||||||    
T  10432454 ttgtatgatggtacaagctttccgagttggctgggaaattcttcgttttcggacatggtatccctctgtatcagtaattgtgaatattgtgtgacacttc 10432355  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    ||||  |||| ||  |||||||||||||||||    
T  10432354 cacccttagggcagttaccttctctcaaggac 10432323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 10519144 - 10519275
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||||||||||||| |||||||||||||||||   | ||| ||||| ||||||||| ||  |  | |||  | |||||||| ||||||| |||||||    
T  10519144 ttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc 10519243  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    || | ||||| ||  |||||||||||||||||    
T  10519244 catccctagggcagttaccttctctcaaggac 10519275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 10530346 - 10530437
Alignment:
Q  63 ctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttccaccactaggccaactaccttctctcaaggac 154  Q
    ||||||||| ||||||||||||  | ||||||| | |||||||||||||  | ||||||||||| ||||| || ||||||||||| ||||||    
T  10530346 ctttgttttataacatggtgtctcttcgcatcgataattgtgaatattgcatgacacttccaccgctagggcagctaccttctctaaaggac 10530437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 12130061 - 12130191
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    |||||| | |||||||| ||||| ||||||||||| ||| |||||||||| ||||| |||||  | |||||| |  |||||  ||||||  | |||||||    
T  12130061 ttgtatagggggacaagttttccaagttggttgggagattctttgttttccaacattgtgtctgttcgcatcacaaattgttcatattgcatgacacttc 12130160  T
Q  123 caccactaggccaactaccttctctcaagga 153  Q
    ||||||| ||  | |||||||||||||||||    
T  12130161 caccacttgggaagctaccttctctcaagga 12130191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 9840520 - 9840651
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||||||||||||| |||||||||||||||||   | ||| ||||| |||||| || ||  |  | |||  | |||||||| ||||||| |||||||    
T  9840520 ttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatcgtatctctcagtatcagtaattgtgaaaattgtgtgacacttc 9840619  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    || | ||||| ||  |||||||||||||||||    
T  9840620 catccctagggcagttaccttctctcaaggac 9840651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 10679137 - 10679228
Alignment:
Q  63 ctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttccaccactaggccaactaccttctctcaaggac 154  Q
    ||||||| | ||||||||||||  | ||||||| | ||| |||||||||  | ||||||||||| ||||| || ||||||||||| ||||||    
T  10679137 ctttgttctataacatggtgtctcttcgcatcgataattctgaatattgcatgacacttccaccgctagggcagctaccttctctaaaggac 10679228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 11129089 - 11129020
Alignment:
Q  370 gggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaa 439  Q
    |||| ||||||||||||||||  ||| |||||||||| ||||||  ||||| ||| ||||||| ||||||    
T  11129089 gggaaatttgcctagccatctctcttccatagaagaatttgtaaataaaggttgtcctcatctgttggaa 11129020  T

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Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 10530659 - 10530731
Alignment:
Q  370 gggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaaca 442  Q
    ||||||||| |||||||| ||  ||| |||||||||||||  |||| |||| ||| ||| |||||||||||||    
T  10530659 gggacattttcctagccacctatcttccatagaagaaattcaaatagaaggttgtgctcgtctattggaaaca 10530731  T

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Target: scaffold0083 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 363 - 553
Target Start/End: Complemental strand, 55666 - 55479
Alignment:
Q  363 aactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattg 462  Q
    |||||| |||||||||||| | | | ||||||| |||||||||||||||||||  ||| |||||||||||||||||||||   |||   ||| |||||||    
T  55666 aactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattg 55570  T
Q  463 gttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    |||||| ||| |||| | ||| |||||| ||||||||| || |||  |||||||||||||||||||||| |||| |||| ||| |||||||    
T  55569 gttgtcttcaataaaaataatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaa 55479  T

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Target: scaffold0083; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 56012 - 55879
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    |||||||||||||||||||||||||||||||||||   | |||  |||| ||||||||| ||  |  | |||  | |||||||| ||||||| |||||||    
T  56012 ttgtatggtgggacaagctttccgagttggttgggaagttcttcattttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc 55913  T
Q  123 caccactaggccaactaccttctctcaaggactt 156  Q
    || | ||||| ||  |||||||||||||||||||    
T  55912 catccctagggcagttaccttctctcaaggactt 55879  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 356 - 553
Target Start/End: Original strand, 26908886 - 26909080
Alignment:
Q  356 tgtcctaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactt 455  Q
    ||||| |||||||| |||| |||||||||| | |||||||||||||||||||||||||||||||| || | ||||||||||||||||   |||   ||||    
T  26908886 tgtccaaaactaaaaggacttttgcctagcaaccttccttgcatagaagaaattgtaataaaaggttgctatcatctattggaaaca---ccatctactt 26908982  T
Q  456 tgcattggttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagagattatccgagtaagatgcaa 553  Q
    | |||||| |||||||  ||  ||||||||||||| ||||||||| |  |||||||  ||||||||||||| |||| |||| |||  ||| |||||||    
T  26908983 tacattgggtgtcgtccataccgaaaattaatatccatgggcttggtaaaaggaccatattgtcattgcttaagagtgattctccctgtatgatgcaa 26909080  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 26908547 - 26908678
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||||||||||||| || |||||||||||||| ||  |||  |||||||| ||||||||| | | |||  || ||||||||| |||   ||||||||    
T  26908547 ttgtatggtgggacaagtttcccgagttggttgggagactcttcattttctaagatggtgtcccttcacataactaattgtgaattttgcccaacacttc 26908646  T
Q  123 caccactaggccaactaccttctctcaaggac 154  Q
    |||| ||||| |||||||||| ||||||||||    
T  26908647 cacccctaggacaactaccttttctcaaggac 26908678  T

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Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 11486694 - 11486822
Alignment:
Q  23 ttgtatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttc 122  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||  |||||||| ||||||||| |   ||||  | |||||||||||||  | |||||||    
T  11486694 ttgtatggtgggacaagttttccgaattggttgggtgattcttcattttctaaaatggtgtccctttacatcaatgattgtgaatattgcatgacacttc 11486793  T
Q  123 caccactaggccaactaccttctctcaag 151  Q
    |||| ||||| |||||||| |||||||||    
T  11486794 caccgctagggcaactaccatctctcaag 11486822  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 44956084 - 44955957
Alignment:
Q  26 tatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttccac 125  Q
    |||||||||||||||||||| | ||||||||| |||  || |||||||||||||| |||| |  |||||  | |||| |  |||||||||||||||||||    
T  44956084 tatggtgggacaagctttccaaattggttgggagatttttcgttttctaacatggcgtccctttgcatcagtaattgagggtattgtgtaacacttccac 44955985  T
Q  126 cactaggccaactaccttctctcaagga 153  Q
    | || || ||||| |||| |||||||||    
T  44955984 cgctggggcaactgccttttctcaagga 44955957  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 490
Target Start/End: Original strand, 11487042 - 11487164
Alignment:
Q  365 ctaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggt 464  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||   |||| ||| ||| | ||||| |||||||||   |||    ||||||||||||    
T  11487042 ctaaggggacatttgcctagccaccttccttgcatagaaaaaattaatataacaggttgtgcccatcttttggaaaca---ccatctgctttgcattggt 11487138  T
Q  465 tgtcgtcagtaaagaaaattaatatc 490  Q
    |||||||| |||| |||||| |||||    
T  11487139 tgtcgtcaataaaaaaaattgatatc 11487164  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 442
Target Start/End: Complemental strand, 44955732 - 44955662
Alignment:
Q  372 gacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaaca 442  Q
    |||| ||||| || |||||| ||| |||||||||||||| ||||||||  ||| |||||||||||||||||    
T  44955732 gacacttgccaagtcatctttcttccatagaagaaattgaaataaaagattgtgctcatctattggaaaca 44955662  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 17851333 - 17851205
Alignment:
Q  26 tatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttccac 125  Q
    |||||||||||||| ||||| |||||| | || ||| ||| |||||||||||| |||| |||| |||||  | || ||||| ||||  | ||||||||||    
T  17851333 tatggtgggacaagttttccaagttggctaggagattcttcgttttctaacatcgtgttcttgggcatcagtaatggtgaacattgcatgacacttccac 17851234  T
Q  126 cactaggccaactaccttctctcaaggac 154  Q
    | || || || ||||||||||| ||||||    
T  17851233 cgctggggcagctaccttctctgaaggac 17851205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 827555 - 827679
Alignment:
Q  26 tatggtgggacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttccac 125  Q
    ||||||||||| || |||||  |||||||||| |||  ||  |||||||||||||||| | |  || ||  || |||||  ||||||||||||||||| |    
T  827555 tatggtgggacgagttttccacgttggttgggagattgttcattttctaacatggtgtacctttgcctcagttcttgtgtgtattgtgtaacacttcctc 827654  T
Q  126 cactaggccaactaccttctctcaa 150  Q
    ||||||| |||||| ||||||||||    
T  827655 cactaggacaactaacttctctcaa 827679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 827895 - 827942
Alignment:
Q  363 aactaaagggacatttgcctagccatcttccttgcatagaagaaattg 410  Q
    |||| |||||||||||||||||||||||||||| |||||| |||||||    
T  827895 aactgaagggacatttgcctagccatcttccttccatagaggaaattg 827942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 31678060 - 31677977
Alignment:
Q  106 atattgtgtaacacttccaccactaggccaactaccttctctcaaggacttgactattgagggtatgacaatggaaacaattgg 189  Q
    ||||||| ||||  |||||||| |||| || |||||||||||||||||||||||||||   || |||||| |||| ||||||||    
T  31678060 atattgtataacgattccaccaatagggcagctaccttctctcaaggacttgactattagaggcatgacattggagacaattgg 31677977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 29838313 - 29838430
Alignment:
Q  37 aagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgcgcatcgcttattgtgaatattgtgtaacacttccaccactaggccaa 136  Q
    ||||||||| ||||||||||| ||| |||  || | ||||||||||| | |  |||||  | |||||||||||||  | ||||||||| ||||||| ||     
T  29838313 aagctttccaagttggttgggagattcttcattctttaacatggtgtaccttagcatcagtaattgtgaatattgccttacacttccatcactagggcat 29838412  T
Q  137 ctaccttctctcaaggac 154  Q
    ||| ||||||||||||||    
T  29838413 ctatcttctctcaaggac 29838430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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