View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16505_low_5 (Length: 528)
Name: NF16505_low_5
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 113 - 513
Target Start/End: Original strand, 41956430 - 41956828
Alignment:
| Q |
113 |
cttcgataccaatctcaacgtaactgctaaagaagatctaaaagaggaaaacacaaacctggacgtgaaacacaagctagaaagatgctatgcagtatgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41956430 |
cttcgataccaatctcaacgtaactgctaaagaagatctaaaagaggaaagcacaaacttggacgtgaaacacaagctagaaagatgctatgcagtatgt |
41956529 |
T |
|
| Q |
213 |
acattgcttgttacggtagttaaagagtactttatgttctggtcgtcaattattgtgggccaaaatattcacatgtcttttacgaactttaacacatttt |
312 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41956530 |
acattgcttgttacggtagttaa-gagtactttatgttctggtcgtcaattattgtgggccaaaatattcacatgtcttttacgaactttaacacatttt |
41956628 |
T |
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| Q |
313 |
cactccagttgatgcatgagttcaatttgtgtgtgtttttaactgttccataatcgactccacatatttatagtttatacattttacttctattttgatt |
412 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41956629 |
cattccaattgatgcatgagttcaatttgtgtgtgtttttaactgttccataatcgactccacatatttatagtttatacattttacttctattttgatt |
41956728 |
T |
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| Q |
413 |
taaaatattaatttgtaatnnnnnnncatatagttgctacattcgtctttaaaatatatttcctttgttcacacttttccatcttaaaatggctaattgc |
512 |
Q |
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| T |
41956729 |
taaaatattaatttgtaat-aaaaaacacatagttgctacattcgtctttaaaatatatttcctttgttcacacttttccatcttaaaatggctaattgc |
41956827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 23865277 - 23865364
Alignment:
| Q |
26 |
ttttgccagttcaaaactgacaggtgtcctgggtaaagggactgtcccatggtggnnnnnnnntctcctttcccaaattaaacggcac |
113 |
Q |
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| T |
23865277 |
ttttgccagttcaaaactgataggtgtcctgggtaaagggactgtcccatggtgggaaacaagtctcctttcacaaattaaacggcac |
23865364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 33078273 - 33078326
Alignment:
| Q |
25 |
gttttgccagttcaaaactgacaggtgtcctgggtaaagggactgtcccatggt |
78 |
Q |
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| T |
33078273 |
gttttgccaattcaaaactgacaggtgtcctgggtaaagggactgtcccatggt |
33078326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 52131393 - 52131340
Alignment:
| Q |
27 |
tttgccagttcaaaactgacaggtgtcctgggtaaagggactgtcccatggtgg |
80 |
Q |
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|||||||||||||||| | |||||||||||||||||||||| |||| |||||| |
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| T |
52131393 |
tttgccagttcaaaaccaaaaggtgtcctgggtaaagggactttcccgtggtgg |
52131340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 24741765 - 24741852
Alignment:
| Q |
26 |
ttttgccagttcaaaactgacaggtgtcctgggtaaagggactgtcccatggtggnnnnnnnntctcctttcccaaattaaacggcac |
113 |
Q |
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| T |
24741765 |
ttttgtcagttcaaaactgacaggtgtccttggtaaagaggtttttccatggtgggaaaaaagtcttctttcccaaattaaacggcac |
24741852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 5354485 - 5354527
Alignment:
| Q |
26 |
ttttgccagttcaaaactgacaggtgtcctgggtaaagggact |
68 |
Q |
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||||||||||| ||||| |||||||||||| |||||||||||| |
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| T |
5354485 |
ttttgccagtttaaaaccgacaggtgtcctaggtaaagggact |
5354527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 32996925 - 32996979
Alignment:
| Q |
26 |
ttttgccagttcaaaactgacaggtgtcctgggtaaagggactgtcccatggtgg |
80 |
Q |
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|||||| |||||||||| |||| ||||||| ||||||| |||| ||||||||||| |
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| T |
32996925 |
ttttgcaagttcaaaaccgacacgtgtccttggtaaagagactttcccatggtgg |
32996979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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