View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16505_low_6 (Length: 518)

Name: NF16505_low_6
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16505_low_6
NF16505_low_6
[»] chr8 (12 HSPs)
chr8 (2-431)||(6471105-6471533)
chr8 (231-405)||(13177728-13177902)
chr8 (437-508)||(6470545-6470615)
chr8 (324-405)||(24999455-24999536)
chr8 (228-407)||(13018456-13018635)
chr8 (323-407)||(36642765-36642849)
chr8 (254-400)||(38573266-38573412)
chr8 (297-377)||(10921685-10921765)
chr8 (279-340)||(515141-515202)
chr8 (329-378)||(12825293-12825342)
chr8 (324-384)||(1090016-1090076)
chr8 (321-409)||(10328635-10328723)
[»] chr5 (17 HSPs)
chr5 (53-228)||(29281253-29281425)
chr5 (234-408)||(37447211-37447384)
chr5 (297-392)||(3135639-3135734)
chr5 (307-405)||(16054420-16054518)
chr5 (259-400)||(10911042-10911181)
chr5 (279-406)||(39180338-39180465)
chr5 (313-396)||(20894230-20894313)
chr5 (440-505)||(29281654-29281718)
chr5 (313-397)||(565556-565640)
chr5 (250-406)||(39351017-39351173)
chr5 (231-407)||(8713747-8713922)
chr5 (247-391)||(10106896-10107040)
chr5 (297-377)||(12382582-12382662)
chr5 (293-340)||(13138538-13138585)
chr5 (315-396)||(20920888-20920969)
chr5 (294-407)||(36487181-36487294)
chr5 (364-396)||(1056586-1056618)
[»] chr2 (22 HSPs)
chr2 (231-400)||(13530517-13530686)
chr2 (231-392)||(14812248-14812409)
chr2 (231-396)||(15335813-15335978)
chr2 (231-396)||(36903941-36904106)
chr2 (231-340)||(12956807-12956916)
chr2 (268-340)||(31633476-31633548)
chr2 (294-405)||(2854396-2854507)
chr2 (233-396)||(13490820-13490983)
chr2 (231-400)||(37331761-37331930)
chr2 (293-400)||(19955053-19955160)
chr2 (226-396)||(3636380-3636550)
chr2 (231-409)||(9559616-9559794)
chr2 (293-414)||(7271081-7271201)
chr2 (256-405)||(39791502-39791651)
chr2 (297-340)||(7670190-7670233)
chr2 (228-379)||(31608159-31608309)
chr2 (299-358)||(34375270-34375329)
chr2 (231-277)||(248211-248257)
chr2 (231-277)||(3234633-3234679)
chr2 (369-399)||(9047579-9047609)
chr2 (334-398)||(14306172-14306236)
chr2 (330-402)||(16471198-16471270)
[»] chr7 (10 HSPs)
chr7 (233-358)||(7712502-7712627)
chr7 (259-398)||(24316236-24316375)
chr7 (324-406)||(10624915-10624997)
chr7 (303-399)||(23803404-23803500)
chr7 (324-408)||(28514605-28514689)
chr7 (368-408)||(29555826-29555866)
chr7 (326-385)||(3181251-3181310)
chr7 (297-407)||(33878197-33878307)
chr7 (308-356)||(12810514-12810562)
chr7 (293-349)||(25634746-25634802)
[»] chr4 (17 HSPs)
chr4 (222-396)||(29927285-29927460)
chr4 (231-407)||(41735394-41735565)
chr4 (231-406)||(9093554-9093729)
chr4 (327-409)||(3121024-3121106)
chr4 (226-386)||(26876047-26876207)
chr4 (297-396)||(29235568-29235667)
chr4 (233-333)||(43154533-43154633)
chr4 (324-408)||(52270431-52270515)
chr4 (324-400)||(31861617-31861693)
chr4 (300-396)||(43361830-43361926)
chr4 (324-407)||(2168421-2168504)
chr4 (327-398)||(41621889-41621960)
chr4 (233-368)||(43771847-43771981)
chr4 (228-290)||(47470926-47470988)
chr4 (280-396)||(10097942-10098058)
chr4 (300-340)||(16530231-16530271)
chr4 (369-409)||(43594945-43594985)
[»] chr3 (8 HSPs)
chr3 (293-406)||(27213971-27214084)
chr3 (233-396)||(4541282-4541443)
chr3 (293-406)||(45249395-45249508)
chr3 (297-396)||(25122370-25122468)
chr3 (233-396)||(44455068-44455231)
chr3 (146-218)||(42525454-42525526)
chr3 (296-397)||(30403260-30403361)
chr3 (252-384)||(23629251-23629381)
[»] chr1 (13 HSPs)
chr1 (228-377)||(4044845-4044996)
chr1 (259-407)||(3527688-3527834)
chr1 (272-340)||(41834776-41834844)
chr1 (297-378)||(38902208-38902290)
chr1 (324-398)||(42410262-42410336)
chr1 (313-406)||(21779976-21780069)
chr1 (258-396)||(4552135-4552273)
chr1 (293-340)||(1750952-1750999)
chr1 (297-340)||(6790679-6790722)
chr1 (313-392)||(21824244-21824323)
chr1 (305-340)||(32815217-32815252)
chr1 (324-396)||(894758-894830)
chr1 (296-340)||(21030167-21030211)
[»] chr6 (4 HSPs)
chr6 (226-391)||(31631795-31631958)
chr6 (232-409)||(7984535-7984712)
chr6 (231-396)||(40026-40191)
chr6 (324-406)||(6100730-6100812)
[»] scaffold0004 (1 HSPs)
scaffold0004 (306-407)||(97830-97931)
[»] scaffold0265 (2 HSPs)
scaffold0265 (313-392)||(3598-3677)
scaffold0265 (313-392)||(8487-8566)
[»] scaffold0172 (1 HSPs)
scaffold0172 (300-396)||(19413-19509)
[»] scaffold0019 (1 HSPs)
scaffold0019 (226-266)||(67389-67429)
[»] scaffold0002 (1 HSPs)
scaffold0002 (324-400)||(433940-434016)


Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 2 - 431
Target Start/End: Complemental strand, 6471533 - 6471105
Alignment:
Q  2 cctaccggctgagctaagctcacgaggacctcgtaaatagtctttatgtcaattgataaatttcaattagtcaatataaatatgtccttaatctacaatg 101  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6471533 cctatcggctgagttaaactcacgaggacctcgtaaatagtctttatgtcaattgataaatttcaattagtcaatataaatatgtccttaatctacaatg 6471434  T
Q  102 ggaatatgttggtgtttcaggttagtggaccagaaacaacagtagaacttaatgtgaccatgcattgtgaggcttgtgctgaacaactcaagagaaagat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6471433 ggaatatgttggtgtttcaggttagtggaccagaaacaacagtagaacttaatgtgaccatgcattgtgaggcttgtgctgaacaactcaagagaaagat 6471334  T
Q  202 actccaaatgagaggtataatttgtttatggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaatt 301  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||  | ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  6471333 actccaaatgagaggtataatttgtttatgaaaaatgctaacaagtatccctagagtattgtttaagtatccaaaattagtagtttttatcttggaaatt 6471234  T
Q  302 gtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaac 401  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||     
T  6471233 gtataattattacttttatatatgtttgacttgtattttatggacaaactttcttttagtagatttcttaaataatgctcttagaacacttgttaacaag 6471134  T
Q  402 acccttttgtttagtcttgatttcaatgta 431  Q
    |||| |||||||| ||||||||||||||||    
T  6471133 accc-tttgtttattcttgatttcaatgta 6471105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 231 - 405
Target Start/End: Original strand, 13177728 - 13177902
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    ||||||||||||||||| | || |||| |||||||||| || ||||| |||||  |||||  ||||||||| | || |||| ||||||| || |||||||    
T  13177728 ggaaaatgctaacaagtgccctcagggcattgtttaagcattcaaaagtagtaacttttatattggaaattatgtagttatgacttttacatgtgtttga 13177827  T
Q  331 cttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccc 405  Q
    |||||||||| | ||||||||||||||| | || || |||||||||||| |||||||||||||||| ||| ||||    
T  13177828 cttgtattttcaagacaaactttctttttgaagattccttaaacaatgcccttaggacacttgttagcaagaccc 13177902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 437 - 508
Target Start/End: Complemental strand, 6470615 - 6470545
Alignment:
Q  437 tataatttgggcatgtccatcttttcatgttttgcatcatcatatttgccaagtgagcatgaattgatgatg 508  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  6470615 tataatttgggcatgtccatcttttcatgttttgcatcatcata-ttgccaagtcagcatgaattgatgatg 6470545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 405
Target Start/End: Original strand, 24999455 - 24999536
Alignment:
Q  324 tgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccc 405  Q
    ||||||||||||||||| | |||| | |||||||| || |||| ||| |||||||| |||||| ||||||||||||| ||||    
T  24999455 tgtttgacttgtattttcaagacataatttctttttgtgggttcctttaacaatgcccttagggcacttgttaacaagaccc 24999536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 407
Target Start/End: Complemental strand, 13018635 - 13018456
Alignment:
Q  228 tatggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtt 327  Q
    ||||||||||| |||||||| | || |||| |||||||||| ||  |||| ||| |  ||||   ||||||||||||  | ||| ||||| | | |||||    
T  13018635 tatggaaaatgttaacaagtgccctaagggcattgtttaagcatataaaagtagcaacttttgcattggaaattgtacgaatatgactttaacaaatgtt 13018536  T
Q  328 tgacttgtattttaaggacaaacttt-cttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccctt 407  Q
    |||||| |||||| | || | | ||| |||||| | |||| |||||||||||| |||||||||||||||||||| ||||||    
T  13018535 tgacttatattttcaagatatatttttctttta-tgggttccttaaacaatgcccttaggacacttgttaacaagaccctt 13018456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 36642765 - 36642849
Alignment:
Q  323 atgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccctt 407  Q
    |||||||||||||||||| | |||| | |||| ||| |||| |  |||||||||||||||||| |||||| ||||||| ||||||    
T  36642765 atgtttgacttgtattttcaagacataatttccttttgtagataccttaaacaatgctcttagaacacttattaacaagaccctt 36642849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 400
Target Start/End: Complemental strand, 38573412 - 38573266
Alignment:
Q  254 agggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaacttt 353  Q
    ||||||||||||||||||| |||| |||||  ||||   ||||||||||||   |||| ||||  | | ||||||||||| |||||| | | || | |||    
T  38573412 agggtattgtttaagtatctaaaagtagtaacttttgcattggaaattgtacggttataacttcaacaaatgtttgacttatattttcaaggcataattt 38573313  T
Q  354 cttttagtaggtttcttaaacaatgctcttaggacacttgttaacaa 400  Q
    |||||  | |||| ||||||||||| ||||||  |||||||||||||    
T  38573312 ctttttatgggttccttaaacaatgttcttagagcacttgttaacaa 38573266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 10921765 - 10921685
Alignment:
Q  297 aaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaat 377  Q
    ||||||| || |||| | ||||| || ||||||||||||||||| ||||||||  ||||| | ||||||| ||||||||||    
T  10921765 aaattgtgtagttatgatttttacatgtgtttgacttgtattttcaggacaaaaattcttattgtaggttacttaaacaat 10921685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 515141 - 515202
Alignment:
Q  279 tagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtatttt 340  Q
    ||||| ||||||  ||||||||||| || |||| ||||||| |||| |||||||||||||||    
T  515141 tagtaatttttaaattggaaattgtgtagttatgacttttacatatatttgacttgtatttt 515202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 12825293 - 12825342
Alignment:
Q  329 gacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatg 378  Q
    |||||||||||| | |||||| |||||||| |||||||||||||| ||||    
T  12825293 gacttgtatttttaagacaaattttctttttgtaggtttcttaaataatg 12825342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 1090076 - 1090016
Alignment:
Q  324 tgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctctta 384  Q
    ||||||||||||||||| | |||||| || ||||| || |||| |||||||||||| ||||    
T  1090076 tgtttgacttgtattttcaagacaaaattcctttttgtgggttccttaaacaatgccctta 1090016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 409
Target Start/End: Complemental strand, 10328723 - 10328635
Alignment:
Q  321 atatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccctttt 409  Q
    ||||||||||||| |||||  | |||||| ||||||||  ||| ||||||||||||  | |||| |||||||||||  || ||||||||    
T  10328723 atatgtttgacttatatttgtaagacaaaatttctttttatagatttcttaaacaacacccttacgacacttgttagaaaaaccctttt 10328635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 29281253 - 29281425
Alignment:
Q  53 attgataaatttcaattagtcaatataaatatgtccttaatctacaatgggaatatgttggtgtttcaggttagtggaccagaaacaacagtagaactta 152  Q
    |||||||||||| ||| ||||||| |||| |||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||   || |||||||    
T  29281253 attgataaattttaatcagtcaatctaaacatgttcttaatccacaatgggaatttgttggtgtttcaggttagtggaccagagaca---gtggaactta 29281349  T
Q  153 atgtgaccatgcattgtgaggcttgtgctgaacaactcaagagaaagatactccaaatgagaggtataatttgttt 228  Q
    ||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  29281350 atgtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggtatactttgttt 29281425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 234 - 408
Target Start/End: Original strand, 37447211 - 37447384
Alignment:
Q  234 aaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgactt 333  Q
    |||||||||||| | |||| |||| |||||||||||||| |||| ||||| | ||||  ||| ||||| |  | |||| | |||||||| ||||||||||    
T  37447211 aaatgctaacaactgctctcagggcattgtttaagtatctaaaagtagtaatatttaa-ttgaaaattatgcagttatgaattttatatgtgtttgactt 37447309  T
Q  334 gtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacacccttt 408  Q
     |||||| | |||||| |||||||| ||||||| ||||||||||| ||||||| ||||||||| ||| |||||||    
T  37447310 atattttcaagacaaagtttctttttgtaggttccttaaacaatgttcttagggcacttgttagcaagacccttt 37447384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 297 - 392
Target Start/End: Original strand, 3135639 - 3135734
Alignment:
Q  297 aaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacactt 392  Q
    ||||||| || |||| |||||||||||||||||||||||||||| | |||||||||||||||  | ||||||||||||||| | ||||||||||||    
T  3135639 aaattgtgtagttatgacttttatatatgtttgacttgtatttttatgacaaactttctttttattggtttcttaaacaatacccttaggacactt 3135734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 405
Target Start/End: Original strand, 16054420 - 16054518
Alignment:
Q  307 attattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccc 405  Q
    ||||| |||||||||| |||||||||||||||||||  ||||| |||||||| || ||||||||||||||||  |||||||||||||||| ||| ||||    
T  16054420 attatgacttttatatgtgtttgacttgtattttaaaaacaaaatttctttttgtgggtttcttaaacaatgtccttaggacacttgttagcaaaaccc 16054518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 400
Target Start/End: Original strand, 10911042 - 10911181
Alignment:
Q  259 attgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttctttt 358  Q
    |||||||||| ||| ||||||||||||||||| ||||  |||||| ||||||| ||||||||||||||||  |||||||||| | || ||||||||||||    
T  10911042 attgtttaagcatctaaaattagtagtttttatcttgagaattgtgtaattatgacttttatatatgttt--cttgtattttcaagataaactttctttt 10911139  T
Q  359 agtaggtttcttaaacaatgctcttaggacacttgttaacaa 400  Q
      |  ||| ||||||||||   |||| | |||||||||||||    
T  10911140 tatgtgttacttaaacaatatccttatggcacttgttaacaa 10911181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 406
Target Start/End: Complemental strand, 39180465 - 39180338
Alignment:
Q  279 tagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatg 378  Q
    |||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||  ||| ||||  | |||| |||||| ||||    
T  39180465 tagtagcttttaccttggaaattgtgtaattataacttttatatatgtttgacttgtattttcaagacaatttttttttttttgggttccttaaataatg 39180366  T
Q  379 ctcttaggacacttgttaacaacaccct 406  Q
      |||||| || ||||||| || |||||    
T  39180365 tccttaggccatttgttaagaagaccct 39180338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 313 - 396
Target Start/End: Original strand, 20894230 - 20894313
Alignment:
Q  313 acttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    ||||||| || ||||||||||||||||| | |||||| |||||| | |||| ||||||||||||||| |||||| |||||||||    
T  20894230 acttttacatgtgtttgacttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgcccttagggcacttgtta 20894313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 505
Target Start/End: Original strand, 29281654 - 29281718
Alignment:
Q  440 aatttgggcatgtccatcttttcatgttttgcatcatcatatttgccaagtgagcatgaattgatg 505  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||||||| ||||| ||||||||    
T  29281654 aatttgggcatgtccatcttttcatgttctgtatcatcata-ttgccaagtcagcattaattgatg 29281718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 313 - 397
Target Start/End: Original strand, 565556 - 565640
Alignment:
Q  313 acttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaa 397  Q
    |||||||||| ||||||||||||||||| | ||||||  ||||||| |||||||| ||||| ||||| |||| |||| |||||||    
T  565556 acttttatatgtgtttgacttgtattttcaagacaaaaattctttttgtaggttttttaaataatgcccttaagacatttgttaa 565640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 250 - 406
Target Start/End: Original strand, 39351017 - 39351173
Alignment:
Q  250 tcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaa 349  Q
    ||||| ||||||||||||  || || || ||||| ||||||  || |||||||||||||||| ||||||| || ||||||||||||||||| | || |||    
T  39351017 tcttaaggtattgtttaaacattcagaagtagtaatttttacattagaaattgtataattatgacttttagatgtgtttgacttgtattttcatgataaa 39351116  T
Q  350 ctttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccct 406  Q
     ||| ||||  |  |||  |||||||||||||||| |||| || |||| || |||||    
T  39351117 atttatttttctgagttctttaaacaatgctcttaagacagttcttaataagaccct 39351173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 407
Target Start/End: Complemental strand, 8713922 - 8713747
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    ||||||||||||||||| |||| ||||||||||||||| ||  |||| ||  |  ||||   || ||||||||  | |||| ||||  | ||||||||||    
T  8713922 ggaaaatgctaacaagtgctctaagggtattgtttaagcatttaaaagtaacaacttttgtattagaaattgtgcagttatgacttaaa-atatgtttga 8713824  T
Q  331 cttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccctt 407  Q
    |||||||||| | |||||| ||| ||||| | | |||||||||||||   ||||||||| | |||||||| ||||||    
T  8713823 cttgtattttcaagacaaaattttttttaatggatttcttaaacaatatccttaggacagtggttaacaaaaccctt 8713747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 391
Target Start/End: Original strand, 10106896 - 10107040
Alignment:
Q  247 tactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtattttaaggac 346  Q
    ||||||||| | |||||||||||||  |||| | ||| ||||||  | | ||| ||| || |||| ||||||| |||| |||| |||||||||| | ||     
T  10106896 tactcttagtgcattgtttaagtatttaaaaatggtattttttacatagaaaaatgtgtagttatgacttttacatatctttggcttgtattttcaagat 10106995  T
Q  347 aaactttcttttagtaggtttcttaaacaatgctcttaggacact 391  Q
    ||| ||||||||| ||| || |||||||||| |||| | ||||||    
T  10106996 aaaatttcttttaatagcttccttaaacaattctctcatgacact 10107040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 12382662 - 12382582
Alignment:
Q  297 aaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaat 377  Q
    |||||||||  |||| |||||||||||||||||||||||||||| | || ||| |||||| |  || ||| ||||||||||    
T  12382662 aaattgtatgtttatgacttttatatatgtttgacttgtatttttatgataaagtttcttattatatgttccttaaacaat 12382582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 13138538 - 13138585
Alignment:
Q  293 ttggaaattgtataattattacttttatatatgtttgacttgtatttt 340  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||||||    
T  13138538 ttggaaattatgtaattatgacttttatatgtgtttgacttgtatttt 13138585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 396
Target Start/End: Complemental strand, 20920969 - 20920888
Alignment:
Q  315 ttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    |||||||| | | |||| |||||||| | |||||| |||||| | |||| ||||||||||||||  |||||| |||||||||    
T  20920969 ttttatatgtatatgacatgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgtccttagggcacttgtta 20920888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 36487294 - 36487181
Alignment:
Q  294 tggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttg 393  Q
    |||||| |||| | |||| ||||| | |||||||||| ||||||||| |  ||| | |||||||| || |||| ||||||||||| |||||   ||||||    
T  36487294 tggaaagtgtacagttatgactttaacatatgtttgatttgtattttcaatacataatttctttttgtgggttccttaaacaatgttcttatagcacttg 36487195  T
Q  394 ttaacaacaccctt 407  Q
    ||| ||| ||||||    
T  36487194 ttagcaagaccctt 36487181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 396
Target Start/End: Original strand, 1056586 - 1056618
Alignment:
Q  364 gtttcttaaacaatgctcttaggacacttgtta 396  Q
    ||||||||||||||||||||| |||||||||||    
T  1056586 gtttcttaaacaatgctcttaagacacttgtta 1056618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 231 - 400
Target Start/End: Original strand, 13530517 - 13530686
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    |||||||| ||||||||   |||| ||||||||||||| |||||||||||||||||||||  ||| ||||||| ||||||| |||| |||||||||||||    
T  13530517 ggaaaatgttaacaagtgtccttaaggtattgtttaagcatccaaaattagtagtttttactttgaaaattgtgtaattatgacttgtatatatgtttga 13530616  T
Q  331 cttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaa 400  Q
    |||||||||| | |||||||||| |||| || | || ||| |||||||  |||| |||||||||||||||    
T  13530617 cttgtattttcaagacaaactttttttttgtggattcctttaacaatgtccttaagacacttgttaacaa 13530686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 231 - 392
Target Start/End: Original strand, 14812248 - 14812409
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    ||||||||||||||||| | |||| || |||||||||| || ||||| || ||  |||||  ||| ||||||| ||||||| ||||||| ||||||||||    
T  14812248 ggaaaatgctaacaagtgcccttacggcattgtttaagcattcaaaagtattaacttttacattgaaaattgtgtaattataacttttacatatgtttga 14812347  T
Q  331 cttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacactt 392  Q
    |||||||||| | || ||| |||||||| || | || |||||||||| |||||| |||||||    
T  14812348 cttgtattttcaagataaaatttctttttgttgtttccttaaacaatactcttatgacactt 14812409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 231 - 396
Target Start/End: Complemental strand, 15335978 - 15335813
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    ||||||| ||||||||| |||| |||| |||||||||| ||| |||| ||| | |||||   || ||||||||| |||||| ||||| | ||||||||||    
T  15335978 ggaaaatactaacaagtgctctcagggcattgtttaagcatctaaaagtagcaatttttgcatttgaaattgtacaattatgactttaacatatgtttga 15335879  T
Q  331 cttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    |||||||||| | ||||||  |||| || || |||| |||||||||||| ||| || |||||||||    
T  15335878 cttgtattttcaagacaaaaattctctttgtgggttccttaaacaatgcccttggggcacttgtta 15335813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 396
Target Start/End: Complemental strand, 36904106 - 36903941
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    |||||||||||||||||   || |||| |||||||||| ||| |||| ||| |  ||||   ||||||||||||   |||| ||||| |||  |||||||    
T  36904106 ggaaaatgctaacaagtgtcctaagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttatgactttaataagtgtttga 36904007  T
Q  331 cttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    |||||||||| | |||| | |||||||| || |||| |||||||||||| |||||| |||||||||    
T  36904006 cttgtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgtta 36903941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 340
Target Start/End: Original strand, 12956807 - 12956916
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    |||||||||||||||||  ||||| ||||||||||||| || ||||| ||| | |||| |   ||||||||||||| |||| ||||| | || |||||||    
T  12956807 ggaaaatgctaacaagtgttcttatggtattgtttaagcatacaaaagtagaaattttaacaatggaaattgtatagttatgactttgacatgtgtttga 12956906  T
Q  331 cttgtatttt 340  Q
    ||||||||||    
T  12956907 cttgtatttt 12956916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 31633476 - 31633548
Alignment:
Q  268 gtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtatttt 340  Q
    |||||||||||||||| ||||||  ||||||||||| || ||||  |||||| ||||||||||||||||||||    
T  31633476 gtatccaaaattagtaatttttacattggaaattgtgtagttatgccttttacatatgtttgacttgtatttt 31633548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 405
Target Start/End: Original strand, 2854396 - 2854507
Alignment:
Q  294 tggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttg 393  Q
    |||||||||| || |||| ||||||| |||||||| ||||||||||| | |||||| |||||||  || | || ||||||| |||| |||||| ||||||    
T  2854396 tggaaattgtgtagttatgacttttagatatgtttaacttgtattttcaagacaaaatttctttatgtggattccttaaacgatgcccttagggcacttg 2854495  T
Q  394 ttaacaacaccc 405  Q
    ||| ||| ||||    
T  2854496 ttagcaagaccc 2854507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 396
Target Start/End: Complemental strand, 13490983 - 13490820
Alignment:
Q  233 aaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgact 332  Q
    |||||| ||| ||||  |||||||| | | |||||| || ||||| ||||| ||||||  ||| |||||||||| |||| | ||||| || |||||| ||    
T  13490983 aaaatgttaataagtgttcttagggcactatttaagcattcaaaaatagtaatttttatattgaaaattgtatagttatgatttttacatgtgtttgcct 13490884  T
Q  333 tgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    | |||||| | |||||| ||| |||| || ||||  |||||||||||| ||||| |||||||||    
T  13490883 tatattttcaagacaaaatttatttttgtgggttctttaaacaatgcttttagggcacttgtta 13490820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 400
Target Start/End: Complemental strand, 37331930 - 37331761
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    ||||||||||||||| |  | ||| | ||||||||||| ||| |||| ||||| |||||   |||  |||||| ||||||| | ||| |||||| |||||    
T  37331930 ggaaaatgctaacaaatgttattaagatattgtttaagcatctaaaagtagtaatttttgtattgacaattgtgtaattatgattttaatatatatttga 37331831  T
Q  331 cttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaa 400  Q
    ||| |||||| | || ||| |||||||| | |||||  |||||||||||  || | ||||||||||||||    
T  37331830 cttatatttttaagataaaatttctttttgcaggttctttaaacaatgcctttggaacacttgttaacaa 37331761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 19955160 - 19955053
Alignment:
Q  293 ttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacactt 392  Q
    ||||||||| ||| ||||| ||||| | |  ||||||| ||||||||| |  ||| | |||||||| || |||| ||||||||||||||||| | |||||    
T  19955160 ttggaaattatatgattatgactttaacaagtgtttgatttgtattttcaaaacataatttctttttgtgggttccttaaacaatgctcttaaggcactt 19955061  T
Q  393 gttaacaa 400  Q
    ||||||||    
T  19955060 gttaacaa 19955053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 396
Target Start/End: Complemental strand, 3636550 - 3636380
Alignment:
Q  226 tttatggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatg 325  Q
    ||||||| |||||||||||||| | |||   | |||||||||| | | |||| |||||  ||||| || | || || | ||||||||||||||| || ||    
T  3636550 tttatgggaaatgctaacaagtgcccttgatgcattgtttaagcaactaaaagtagtaacttttacctagaaacttctgtaattattacttttacatttg 3636451  T
Q  326 tttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    |||||||| | | || | || ||| |||||| || ||| || |||||||||||| |||||| |||||||||    
T  3636450 tttgacttatgtgttcaagataaaatttcttataatagattccttaaacaatgcccttagggcacttgtta 3636380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 409
Target Start/End: Complemental strand, 9559794 - 9559616
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    |||||||  |||||||| | ||||||  |||||||||| || ||||| || ||  |||||  ||||||||||| || |||| | ||||| |  |||||||    
T  9559794 ggaaaatattaacaagtgcccttaggacattgtttaagcattcaaaaatattaacttttacattggaaattgtgtagttataatttttacacgtgtttga 9559695  T
Q  331 cttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccctttt 409  Q
    |||||||||| |  ||||| ||| |||| ||  ||  |||||||||| | |||| ||||||||||| ||| ||||||||    
T  9559694 cttgtattttcaaaacaaaatttatttttgtgagtaccttaaacaatacccttaagacacttgttatcaagaccctttt 9559616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 414
Target Start/End: Original strand, 7271081 - 7271201
Alignment:
Q  293 ttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacactt 392  Q
    ||||||||||| ||||||| | |||||||||||||| ||||||||||| |  | ||| ||||||||  || ||| | ||||||||  |||||  ||||||    
T  7271081 ttggaaattgtgtaattatgaattttatatatgtttaacttgtattttcaaaataaaatttcttttttta-gttccctaaacaatattcttaaaacactt 7271179  T
Q  393 gttaacaacacccttttgttta 414  Q
    |||||||| ||| |||| ||||    
T  7271180 gttaacaagacctttttattta 7271201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 405
Target Start/End: Complemental strand, 39791651 - 39791502
Alignment:
Q  256 ggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttct 355  Q
    ||||||||||||| ||  |||| ||| | ||||||  || |||||||||  || || ||||| | | |||||||||||||||||| |  ||| | |||||    
T  39791651 ggtattgtttaagcatataaaagtagcaatttttatattagaaattgtacgataatgactttaacaaatgtttgacttgtattttcaaaacataatttct 39791552  T
Q  356 tttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccc 405  Q
    ||| || | ||  ||||||||| | |||||||||||||||||||| ||||    
T  39791551 ttttgtggattctttaaacaatacccttaggacacttgttaacaagaccc 39791502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 7670233 - 7670190
Alignment:
Q  297 aaattgtataattattacttttatatatgtttgacttgtatttt 340  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||    
T  7670233 aaattgtataattatgacttttccatatgtttgacttgtatttt 7670190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 379
Target Start/End: Complemental strand, 31608309 - 31608159
Alignment:
Q  228 tatggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtt 327  Q
    |||| |||||| |||||| | || |||||| |||||||||| ||   |||| |||| ||||||  ||  |||||||||| |||| | |||||||| ||||    
T  31608309 tatgaaaaatgataacaaatgcttttagggcattgtttaagcataacaaat-agtaatttttatattaaaaattgtatagttatgatttttatatgtgtt 31608211  T
Q  328 tgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgc 379  Q
     | |||| ||||| | |||||| |||||| |  |||||||||||||||||||    
T  31608210 agtcttgcattttcaagacaaaatttcttattataggtttcttaaacaatgc 31608159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 34375329 - 34375270
Alignment:
Q  299 attgtataattattacttttatatatgtttgacttgtattttaaggacaaactttctttt 358  Q
    ||||| ||||||| || ||||||||||||||||||||||||| | |||||| ||| ||||    
T  34375329 attgtgtaattatgacatttatatatgtttgacttgtattttcaagacaaattttgtttt 34375270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 248257 - 248211
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaa 277  Q
    ||||||||||| ||||||| |||||||||||||||||| || |||||    
T  248257 ggaaaatgctatcaagtacccttagggtattgtttaagaattcaaaa 248211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 3234633 - 3234679
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaa 277  Q
    ||||||||||||||||| | ||||||| |||||||||| ||||||||    
T  3234633 ggaaaatgctaacaagtgcccttagggcattgtttaagcatccaaaa 3234679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 399
Target Start/End: Complemental strand, 9047609 - 9047579
Alignment:
Q  369 ttaaacaatgctcttaggacacttgttaaca 399  Q
    |||||||||||||||||||||||||||||||    
T  9047609 ttaaacaatgctcttaggacacttgttaaca 9047579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 14306172 - 14306236
Alignment:
Q  334 gtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaac 398  Q
    ||||||| | |||||| |||||||| || | ||||||||||||| |||||||  |||||||||||    
T  14306172 gtattttcaagacaaaatttcttttcgtggatttcttaaacaatcctcttagagcacttgttaac 14306236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 402
Target Start/End: Original strand, 16471198 - 16471270
Alignment:
Q  330 acttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaaca 402  Q
    ||||||||||| |  | ||| |||||||| || |||| ||||||||||| ||||| ||||||||||| |||||    
T  16471198 acttgtattttcaacataaaatttctttttgtgggttccttaaacaatgttcttatgacacttgttagcaaca 16471270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 233 - 358
Target Start/End: Complemental strand, 7712627 - 7712502
Alignment:
Q  233 aaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgact 332  Q
    |||||| |||||| ||| ||||||| |||||||||| ||| |||||||| |||||||| ||| |||||||| ||||||| |||||||||| |||||||||    
T  7712627 aaaatgttaacaaatacccttagggcattgtttaagcatctaaaattagaagtttttaccttagaaattgtgtaattatcacttttatatttgtttgact 7712528  T
Q  333 tgtattttaaggacaaactttctttt 358  Q
    |||||||| |  ||||||||||||||    
T  7712527 tgtattttcaaaacaaactttctttt 7712502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 398
Target Start/End: Complemental strand, 24316375 - 24316236
Alignment:
Q  259 attgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttctttt 358  Q
    |||||||||  ||||| ||||||||| ||||| |||||||||||| ||||||| ||||||||| || ||||||||||||||| |  ||||||||||||||    
T  24316375 attgtttaaacatccataattagtagattttatcttggaaattgtgtaattataacttttatacatatttgacttgtattttcaaaacaaactttctttt 24316276  T
Q  359 agtaggtttcttaaacaatgctcttaggacacttgttaac 398  Q
     |||| || || |||||||    |||||||||||||||||    
T  24316275 tgtagattcctcaaacaatatcattaggacacttgttaac 24316236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 324 - 406
Target Start/End: Complemental strand, 10624997 - 10624915
Alignment:
Q  324 tgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccct 406  Q
    ||||||||||||||||| | |||| | |||||||| || ||||  ||||||||||| ||||| |||||||||||||| |||||    
T  10624997 tgtttgacttgtattttcaagacataatttctttttgtgggttctttaaacaatgcccttagaacacttgttaacaagaccct 10624915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 399
Target Start/End: Original strand, 23803404 - 23803500
Alignment:
Q  303 tataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaaca 399  Q
    ||||||||||||||||| || |||||||||| || ||| | || ||| |||||| || ||| || ||| |||||| ||||||  |||||||||||||    
T  23803404 tataattattacttttaaatgtgtttgacttataattttaagataaaatttcttataatagattccttgaacaatactcttaaaacacttgttaaca 23803500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 408
Target Start/End: Complemental strand, 28514689 - 28514605
Alignment:
Q  324 tgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacacccttt 408  Q
    |||||||||| |||||| | | || | ||||||||  | |||| |||||||||||| |||||| ||||||||||||| |||||||    
T  28514689 tgtttgacttatattttcaaggcataatttctttttatgggttccttaaacaatgcccttagggcacttgttaacaagacccttt 28514605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 29555826 - 29555866
Alignment:
Q  368 cttaaacaatgctcttaggacacttgttaacaacacccttt 408  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  29555826 cttaaacaatgctcttaggacacttgttagcaatacccttt 29555866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 385
Target Start/End: Original strand, 3181251 - 3181310
Alignment:
Q  326 tttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttag 385  Q
    ||||||||||||||| | |||||| | |||||| |||||||||||||||| || ||||||    
T  3181251 tttgacttgtattttcaagacaaagtatctttttgtaggtttcttaaacattgttcttag 3181310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 407
Target Start/End: Original strand, 33878197 - 33878307
Alignment:
Q  297 aaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    ||||||| || |||| ||||||| |||||||||| ||||||||| |||| ||| ||| ||||  |  ||| |||||||||| | | ||  ||||||||||    
T  33878197 aaattgtgtagttatgacttttacatatgtttgatttgtatttttaggataaattttttttttctgagttccttaaacaatacccctaaaacacttgtta 33878296  T
Q  397 acaacaccctt 407  Q
    |||| ||||||    
T  33878297 acaaaaccctt 33878307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 12810514 - 12810562
Alignment:
Q  308 ttattacttttatatatgtttgacttgtattttaaggacaaactttctt 356  Q
    |||| |||||||||| ||||||||||||||||| | |||||| ||||||    
T  12810514 ttataacttttatatgtgtttgacttgtattttcaagacaaagtttctt 12810562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 25634746 - 25634802
Alignment:
Q  293 ttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaa 349  Q
    ||||||||||| || |||| | ||||| |||||||||||||||||||| || |||||    
T  25634746 ttggaaattgtgtagttatcatttttacatatgtttgacttgtatttttagaacaaa 25634802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 222 - 396
Target Start/End: Complemental strand, 29927460 - 29927285
Alignment:
Q  222 tttgtttatggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagt--agtttttagcttggaaattgtataattattactttta 319  Q
    |||||||| ||||||||||||||||||| ||| ||| |||||||||| || ||| | ||||  |  |||||  ||| |||||||||| |||| |||||||    
T  29927460 tttgttta-ggaaaatgctaacaagtacccttggggcattgtttaagcattcaatagtagtgtatattttacattgaaaattgtatagttatgactttta 29927362  T
Q  320 tatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    ||| ||||||||||||||||  | |||||| |||||||| || | || |||||||||||| |||||| |||||||||    
T  29927361 tatgtgtttgacttgtatttccaagacaaagtttctttttgtggattccttaaacaatgcccttagggcacttgtta 29927285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 231 - 407
Target Start/End: Complemental strand, 41735565 - 41735394
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    ||||||||||||||||||     |||| |||||||||| ||| |||| ||| | |||||   ||||||||||||  ||||| ||||| | |  |||||||    
T  41735565 ggaaaatgctaacaagta-----agggcattgtttaagcatctaaaagtagcaatttttgtattggaaattgtacgattatgactttaacaagtgtttga 41735471  T
Q  331 cttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccctt 407  Q
    |||||||||| | |||| | |||||||| ||  ||||||||||||||  ||||||| ||||||||||||| ||||||    
T  41735470 cttgtattttcaagacataatttctttttgtgagtttcttaaacaatattcttagggcacttgttaacaagaccctt 41735394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 231 - 406
Target Start/End: Original strand, 9093554 - 9093729
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    |||||||| |||||||| || | |||||||||||||||| || |||| ||||| |||||   ||| ||||||||   |||| ||||  | |  |||||||    
T  9093554 ggaaaatgttaacaagtgctttaagggtattgtttaagtctctaaaagtagtaatttttgcattgaaaattgtacggttataacttaaacaagtgtttga 9093653  T
Q  331 cttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccct 406  Q
    ||| |||||| | | |||| ||||||||  | |||| |||||||||||  |||||||||||||||||||| |||||    
T  9093654 cttatattttcaaggcaaaatttctttttatgggttccttaaacaatgtccttaggacacttgttaacaagaccct 9093729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 409
Target Start/End: Complemental strand, 3121106 - 3121024
Alignment:
Q  327 ttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccctttt 409  Q
    ||||||| |||||| | |||| | ||||||||  | |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  3121106 ttgacttatattttcaagacataatttctttttatgggttccttaaacaatgctcttaggacacttgttaacaacaccttttt 3121024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 386
Target Start/End: Original strand, 26876047 - 26876207
Alignment:
Q  226 tttatggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatg 325  Q
    |||||||||||||||||||||| |||| ||||||||||||||| ||  |||| ||| || ||||   ||||||||||||   |||| ||||| | |  ||    
T  26876047 tttatggaaaatgctaacaagtgctctaagggtattgtttaagcatataaaagtagcagcttttgtattggaaattgtagggttatgactttaagaagtg 26876146  T
Q  326 tttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttagg 386  Q
    ||||||||||||||| | | || | ||||||||  | |||| |||||||||| | ||||||    
T  26876147 tttgacttgtattttcaagccataatttctttttttgggttccttaaacaattcccttagg 26876207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 396
Target Start/End: Original strand, 29235568 - 29235667
Alignment:
Q  297 aaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    ||||||| || |||| |||||||  | |||||||||| |||||| | |||||| |||||||| || |||| |||| | ||||||||||||||||||||||    
T  29235568 aaattgtgtagttataacttttacctgtgtttgacttctattttcaagacaaaatttctttttgtgggttccttagataatgctcttaggacacttgtta 29235667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 43154533 - 43154633
Alignment:
Q  233 aaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgact 332  Q
    |||||||||||||||||| ||| | |||||||||| |||  |||| || || ||||||  || ||||||||||| |||||||||||| || ||| |||||    
T  43154533 aaaatgctaacaagtacttttatgatattgtttaaatatttaaaagtaataatttttatattagaaattgtatatttattacttttacatgtgtctgact 43154632  T
Q  333 t 333  Q
    |    
T  43154633 t 43154633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 408
Target Start/End: Complemental strand, 52270515 - 52270431
Alignment:
Q  324 tgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacacccttt 408  Q
    |||||||||| |||||| | |||| | |||| ||| || |||| |||||||||||| |||||| ||||||||||||| |||||||    
T  52270515 tgtttgacttatattttcaagacatattttccttttgtgggttccttaaacaatgcccttagggcacttgttaacaagacccttt 52270431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 31861617 - 31861693
Alignment:
Q  324 tgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaa 400  Q
    |||||||||| |||||| | |||| | ||||||||  | | || |||||||||| ||||||||||||||||||||||    
T  31861617 tgtttgacttatattttcaagacataatttctttttatggattccttaaacaatactcttaggacacttgttaacaa 31861693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 396
Target Start/End: Original strand, 43361830 - 43361926
Alignment:
Q  300 ttgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    |||| ||| ||||||||||| |  |||||||||| | |||| | || ||| ||||||||| | | || ||||||||||| |||||||||||||||||    
T  43361830 ttgtgtaagtattacttttaaacgtgtttgacttatgtttttaagataaagtttcttttaatggattccttaaacaatgttcttaggacacttgtta 43361926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 407
Target Start/End: Complemental strand, 2168504 - 2168421
Alignment:
Q  324 tgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccctt 407  Q
    ||||||||||||||||| |||||| | ||| ||||  | ||||  ||||||||||  |||||| ||||||||||||| ||||||    
T  2168504 tgtttgacttgtattttcaggacataatttatttttatgggttctttaaacaatgtccttagggcacttgttaacaagaccctt 2168421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 41621960 - 41621889
Alignment:
Q  327 ttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaac 398  Q
    |||| ||||||||| | |||| | |||||||| || |||| |||||||||||| |||||| |||||||||||    
T  41621960 ttgatttgtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgttaac 41621889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 368
Target Start/End: Complemental strand, 43771981 - 43771847
Alignment:
Q  233 aaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgact 332  Q
    ||||||||||||||| | |||| |  |||||||||| || ||||| ||||| ||||||  ||| || ||||  | |||| ||||| | || |||||||||    
T  43771981 aaaatgctaacaagtgcccttatgacattgtttaagcattcaaaagtagtaatttttacattgtaa-ttgtgcagttatgactttaacatgtgtttgact 43771883  T
Q  333 tgtattttaaggacaaactttcttttagtaggtttc 368  Q
    |||||||| | |||||| |||||||| |||| ||||    
T  43771882 tgtatttttaagacaaagtttctttttgtagatttc 43771847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 47470988 - 47470926
Alignment:
Q  228 tatggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagttttta 290  Q
    |||| ||||||||||||||| |||||||| ||||||||||  || ||||| ||||| ||||||    
T  47470988 tatgaaaaatgctaacaagtgctcttaggatattgtttaaagattcaaaagtagtaattttta 47470926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 10097942 - 10098058
Alignment:
Q  280 agtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgc 379  Q
    |||| ||||||  ||| |||||||||| |||| ||||||| || | |||| ||| |||||| | |||||| ||||| || || | || ||||||||||      
T  10097942 agtaatttttatattgaaaattgtatagttatgacttttacatgtatttgccttatattttcaagacaaaatttctctttgtggattccttaaacaatat 10098041  T
Q  380 tcttaggacacttgtta 396  Q
    | |||||||||||||||    
T  10098042 ttttaggacacttgtta 10098058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 16530271 - 16530231
Alignment:
Q  300 ttgtataattattacttttatatatgtttgacttgtatttt 340  Q
    |||| ||||||||||||||| ||||||||||||| ||||||    
T  16530271 ttgtgtaattattacttttacatatgtttgacttatatttt 16530231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 43594985 - 43594945
Alignment:
Q  369 ttaaacaatgctcttaggacacttgttaacaacaccctttt 409  Q
    |||||||||||||||||| || |||||||||| ||||||||    
T  43594985 ttaaacaatgctcttagggcatttgttaacaaaaccctttt 43594945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 293 - 406
Target Start/End: Original strand, 27213971 - 27214084
Alignment:
Q  293 ttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacactt 392  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||||| | |||||| |||||||| ||  ||| |||||||||||  ||||| ||||||    
T  27213971 ttggaaattgtatagttatgacttttacatatgtttgacttgtatttttaagacaaagtttctttttgtgtgttccttaaacaatgtccttagaacactt 27214070  T
Q  393 gttaacaacaccct 406  Q
    |||||||| |||||    
T  27214071 gttaacaagaccct 27214084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 396
Target Start/End: Original strand, 4541282 - 4541443
Alignment:
Q  233 aaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgact 332  Q
    ||||||||||||| ||| |||| || |||||||||| |||||||||||||| ||||||  |||  |||| | ||||||| ||||||| |||| |||||||    
T  4541282 aaaatgctaacaaatacccttaaggcattgtttaaggatccaaaattagtaatttttatattgagaattttgtaattataacttttacatatctttgact 4541381  T
Q  333 tgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    |||||||| | || ||  ||| |||| ||| ||||||||||||||| ||||| | |||||||||    
T  4541382 tgtattttcaagataa--tttttttttgtatgtttcttaaacaatgttcttatgccacttgtta 4541443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 293 - 406
Target Start/End: Original strand, 45249395 - 45249508
Alignment:
Q  293 ttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacactt 392  Q
    ||||||||||||   |||| ||||| | | |||||||||||||||||| | |||| | |||||||| || |||| |||||||||||| |||||| |||||    
T  45249395 ttggaaattgtacggttatgactttaacaaatgtttgacttgtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcactt 45249494  T
Q  393 gttaacaacaccct 406  Q
    |||||||| |||||    
T  45249495 gttaacaagaccct 45249508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 297 - 396
Target Start/End: Original strand, 25122370 - 25122468
Alignment:
Q  297 aaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    ||||||| || |||| ||||| |  |||||||||||||||||||  ||| |||||| ||||| | ||||| |||||||||||||||||||||||||||||    
T  25122370 aaattgtgtagttatgactttcacgtatgtttgacttgtattttccggataaactt-ctttttgcaggttccttaaacaatgctcttaggacacttgtta 25122468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 233 - 396
Target Start/End: Complemental strand, 44455231 - 44455068
Alignment:
Q  233 aaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgact 332  Q
    ||||||||||||| | | |||| |  |||||||||| ||| |||| | |||  |||||  ||| |||||||||| |||| |||||||| | |||||||||    
T  44455231 aaaatgctaacaaatgcccttaagacattgtttaagaatctaaaagtcgtaaattttacattgaaaattgtatagttatgacttttatgtgtgtttgact 44455132  T
Q  333 tgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    |||||||| | |||||| |||||||  ||  ||||||||||||| |  ||||| ||||||||||    
T  44455131 tgtattttcaagacaaaatttctttctgtgagtttcttaaacaacgtccttagaacacttgtta 44455068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 42525526 - 42525454
Alignment:
Q  146 gaacttaatgtgaccatgcattgtgaggcttgtgctgaacaactcaagagaaagatactccaaatgagaggta 218  Q
    |||||||| |||| |||||| ||||||||||||||||| || |||||| | ||||||||| |||||| |||||    
T  42525526 gaacttaacgtgaacatgcactgtgaggcttgtgctgagcagctcaaggggaagatactcaaaatgaaaggta 42525454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 397
Target Start/End: Original strand, 30403260 - 30403361
Alignment:
Q  296 gaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtt 395  Q
    |||||||||||||||| ||||||| || ||| | ||||||| ||| | |||||| ||||||||  | | ||||||| ||||||   ||||||||||||||    
T  30403260 gaaattgtataattatgacttttacatgtgtctaacttgtagtttcaagacaaattttctttttatggatttcttatacaatgtcgttaggacacttgtt 30403359  T
Q  396 aa 397  Q
    ||    
T  30403360 aa 30403361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 384
Target Start/End: Original strand, 23629251 - 23629381
Alignment:
Q  252 ttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaact 351  Q
    |||||| ||| ||| || |||| ||| |||||  |||||  ||| ||||||||||||||| ||||||| || ||||||| ||||||||| |  ||||  |    
T  23629251 ttagggcatttttttagcatcctaaagtagtaacttttacattgaaaattgtataattatgacttttacatgtgtttgatttgtattttcaaaacaa--t 23629348  T
Q  352 ttcttttagtaggtttcttaaacaatgctctta 384  Q
    ||  ||| | |||||||||||||||||| ||||    
T  23629349 tttattttgaaggtttcttaaacaatgcgctta 23629381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 377
Target Start/End: Complemental strand, 4044996 - 4044845
Alignment:
Q  228 tatggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtt 327  Q
    |||| |||||||||| |||||   |||||  |||||||||| ||| | ||||||||  | ||| ||||||||||||||| |||| |||| ||||||||||    
T  4044996 tatgaaaaatgctaataagtatctttaggacattgtttaagcatctataattagtaactgttatcttggaaattgtatagttatgacttgtatatatgtt 4044897  T
Q  328 tgacttgtattttaaggacaaactttctttt--agtaggtttcttaaacaat 377  Q
    ||||||||||||| | |||||||||||||||    |||||||||||||||||    
T  4044896 tgacttgtattttcaagacaaactttctttttatataggtttcttaaacaat 4044845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 259 - 407
Target Start/End: Original strand, 3527688 - 3527834
Alignment:
Q  259 attgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttctttt 358  Q
    |||||||||||||  |||| |||||  |||||  || |||||||| || |||| |||||||||||||||||||||||||||  |  ||||| ||||||||    
T  3527688 attgtttaagtatataaaagtagtaactttta--ttagaaattgtgtagttatgacttttatatatgtttgacttgtatttccataacaaaatttctttt 3527785  T
Q  359 agtaggtttcttaaacaatgctcttaggacacttgttaacaacaccctt 407  Q
     || | || ||||||||||||||||||   |||||||| ||| ||||||    
T  3527786 tgtggattccttaaacaatgctcttagagtacttgttagcaagaccctt 3527834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 41834776 - 41834844
Alignment:
Q  272 ccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtatttt 340  Q
    |||||| ||||| ||||||  ||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  41834776 ccaaaactagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttt 41834844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 38902208 - 38902290
Alignment:
Q  297 aaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactt-tcttttagtaggtttcttaaacaatg 378  Q
    ||||||| ||||||| |||||||||||||||||||||| ||||| | |||||||||  ||||| || |||| |||||||||||    
T  38902208 aaattgtgtaattatgacttttatatatgtttgacttgaattttcaagacaaacttccctttttgttggttccttaaacaatg 38902290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 324 - 398
Target Start/End: Original strand, 42410262 - 42410336
Alignment:
Q  324 tgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaac 398  Q
    ||||||||||||||||| | |||| | |||||||| || |||| |||||||||||| |||||| |||||||||||    
T  42410262 tgtttgacttgtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgttaac 42410336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 406
Target Start/End: Original strand, 21779976 - 21780069
Alignment:
Q  313 acttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccct 406  Q
    ||||||| || ||||||||||||||||| | |||||| |||||| | |||| |||||||||||||||  |||||  |||||||| ||| |||||    
T  21779976 acttttacatgtgtttgacttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgccattagggaacttgttagcaaaaccct 21780069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 396
Target Start/End: Complemental strand, 4552273 - 4552135
Alignment:
Q  258 tattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttt 357  Q
    ||||||||||| ||| |||| ||||| || |||  ||| ||||||| || ||||  ||||||||| ||||||||||||||||| |  ||||  ||  |||    
T  4552273 tattgtttaagcatctaaaaatagtaattattacgttgaaaattgtgtagttatgtcttttatatttgtttgacttgtattttcaaaacaattttatttt 4552174  T
Q  358 tagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    | |||| || |||||||||| |||||| ||||| |||||    
T  4552173 tcgtagattccttaaacaatactcttaagacacatgtta 4552135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 1750952 - 1750999
Alignment:
Q  293 ttggaaattgtataattattacttttatatatgtttgacttgtatttt 340  Q
    |||||||||||||| |||| | ||||||||||||||||||| ||||||    
T  1750952 ttggaaattgtatatttataatttttatatatgtttgacttatatttt 1750999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 6790679 - 6790722
Alignment:
Q  297 aaattgtataattattacttttatatatgtttgacttgtatttt 340  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||    
T  6790679 aaattgtgtaattattacttttttatatgtttgatttgtatttt 6790722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 392
Target Start/End: Complemental strand, 21824323 - 21824244
Alignment:
Q  313 acttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacactt 392  Q
    |||||||||| | | ||||||||||||| | |||||| |||||| | |||| ||||||||||||||  ||||||| ||||    
T  21824323 acttttatatgtatatgacttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgtccttaggagactt 21824244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 32815217 - 32815252
Alignment:
Q  305 taattattacttttatatatgtttgacttgtatttt 340  Q
    ||||||||||||||| ||||||||||||||||||||    
T  32815217 taattattacttttacatatgtttgacttgtatttt 32815252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 894830 - 894758
Alignment:
Q  324 tgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    ||||||||||||| ||| | |||| | |||| ||| || |||| |||||||||||| |||||| |||||||||    
T  894830 tgtttgacttgtactttcaagacataatttccttttgtgggttccttaaacaatgcccttagggcacttgtta 894758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 21030167 - 21030211
Alignment:
Q  296 gaaattgtataattattacttttatatatgtttgacttgtatttt 340  Q
    |||||||||||  ||||| |||||||| |||||||||||||||||    
T  21030167 gaaattgtatacatattatttttatatgtgtttgacttgtatttt 21030211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 226 - 391
Target Start/End: Original strand, 31631795 - 31631958
Alignment:
Q  226 tttatggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatg 325  Q
    |||| ||||||| |||||||||  |||||||| |||||||||  |||||||| | |||  |||||   || ||||||| ||||||| | ||| || ||||    
T  31631795 tttaaggaaaatactaacaagtg-tcttagggcattgtttaaacatccaaaagtggtaacttttacaatgaaaattgtgtaattatgaattt-atgtatg 31631892  T
Q  326 tttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacact 391  Q
    |||||||| |||||| | ||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  31631893 tttgacttatattttcaagacaaactttctttttgtaagttccttaaacaatgctcttaggacact 31631958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 409
Target Start/End: Complemental strand, 7984712 - 7984535
Alignment:
Q  232 gaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttgac 331  Q
    |||||||||||||||| | ||||||  |||||||||| |||||||| ||| |  |||||  ||| ||||| | || |||| ||||||| || ||||||||    
T  7984712 gaaaatgctaacaagtgcccttaggacattgtttaagcatccaaaagtagcaaattttacattgaaaattttgtagttatgacttttacatgtgtttgac 7984613  T
Q  332 ttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccctttt 409  Q
    ||||||||| | |||||| |||||||| || ||||  ||||||||||  || || |||||||||| ||| ||| ||||    
T  7984612 ttgtattttcaagacaaagtttctttttgtgggttcattaaacaatgtcctcagaacacttgttagcaaaaccttttt 7984535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 396
Target Start/End: Complemental strand, 40191 - 40026
Alignment:
Q  231 ggaaaatgctaacaagtactcttagggtattgtttaagtatccaaaattagtagtttttagcttggaaattgtataattattacttttatatatgtttga 330  Q
    |||||||| ||| |||| | ||||||| |||||||||| ||||||||  ||||  |||||   || |||||| ||| |||| ||||||| || |||||||    
T  40191 ggaaaatgttaagaagtgcacttagggcattgtttaagcatccaaaagcagtaagttttacaatgaaaattgcatagttatgacttttacatgtgtttga 40092  T
Q  331 cttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
     ||||||||| | |||||| |||||||  || |||| |||||||||||  |||||| |||||||||    
T  40091 tttgtattttcaagacaaaatttctttatgtgggttccttaaacaatgtccttagggcacttgtta 40026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 406
Target Start/End: Original strand, 6100730 - 6100812
Alignment:
Q  324 tgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacaccct 406  Q
    |||||||| |||||||| | |||| | |||| ||| || |||| |||||||||||| |||||| ||||||||||||| |||||    
T  6100730 tgtttgacatgtattttcaagacataatttccttttgtgggttccttaaacaatgcccttagggcacttgttaacaagaccct 6100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 407
Target Start/End: Original strand, 97830 - 97931
Alignment:
Q  306 aattattacttttatatatgtttgacttgtattttaaggacaaacttt-cttttagtaggtttcttaaacaatgctcttaggacacttgttaacaacacc 404  Q
    ||||||||||||| | | ||||||||||||||||  | |||||| ||| |||||| | |||| |||||||||||| |||||| ||||||||| || ||||    
T  97830 aattattacttttgtctgtgtttgacttgtatttccaagacaaaatttgctttta-tgggttgcttaaacaatgcccttagggcacttgttagcatcacc 97928  T
Q  405 ctt 407  Q
    |||    
T  97929 ctt 97931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 392
Target Start/End: Original strand, 3598 - 3677
Alignment:
Q  313 acttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacactt 392  Q
    |||||||||| | | ||||||||||||| | |||||| |||||| | |||| ||||||||||||||  ||||||| ||||    
T  3598 acttttatatgtatatgacttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgtccttaggagactt 3677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 392
Target Start/End: Original strand, 8487 - 8566
Alignment:
Q  313 acttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacactt 392  Q
    |||||||||| | | ||||||||||||| | |||||| |||||| | |||| ||||||||||||||  ||||||| ||||    
T  8487 acttttatatgtatatgacttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgtccttaggagactt 8566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 19509 - 19413
Alignment:
Q  300 ttgtataattattacttttatatatgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgtta 396  Q
    |||| ||||||||||||||| || |||||||||| | |||| | || ||| ||||||  ||| |  | |||||||||||  ||||||||||||||||    
T  19509 ttgtgtaattattacttttacatgtgtttgacttatgttttcaagataaaatttcttggagtggaatccttaaacaatgtccttaggacacttgtta 19413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 67389 - 67429
Alignment:
Q  226 tttatggaaaatgctaacaagtactcttagggtattgttta 266  Q
    ||||||||||||| ||||||||| | |||||||||||||||    
T  67389 tttatggaaaatgttaacaagtatttttagggtattgttta 67429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 433940 - 434016
Alignment:
Q  324 tgtttgacttgtattttaaggacaaactttcttttagtaggtttcttaaacaatgctcttaggacacttgttaacaa 400  Q
    |||||||||| |||||| | |||| | ||| |||| || ||||||||||||||||| |||| |  ||||||||||||    
T  433940 tgtttgacttatattttcaagacataatttttttttgtgggtttcttaaacaatgcccttaaggtacttgttaacaa 434016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University