View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16505_low_7 (Length: 517)
Name: NF16505_low_7
Description: NF16505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16505_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 34668166 - 34668560
Alignment:
| Q |
18 |
attgacatatccaatttcagcaaacaaactgattgaacagctaacacaagttcgttggacttggttggacaa---ggagggggagaaaatgaatatgcag |
114 |
Q |
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| T |
34668166 |
attgacatatccaatttcagcaaacaaactgattgaacagctaacacaagatcgttggacttggttggacaacaaggaaggggagaaaatgaatatgcag |
34668265 |
T |
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| Q |
115 |
aagttaaaagctactggtagcaactaagtttataatataagcagaagtataaacaataattaatggaaattaagagtttattattgtgaggactgaccaa |
214 |
Q |
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| T |
34668266 |
aagttaaaagctactggtagcaactaagtttataatataagcagaagtataaacaataattaatggaaattaagagtttattattgtgaggactgaccaa |
34668365 |
T |
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| Q |
215 |
ggatgaaaggtaatgttcggatgcctcctcgttgctgcctcttgctttctttctccaccatcttgccattccctctaatgcctttctcttcctccatatc |
314 |
Q |
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| T |
34668366 |
ggatgaaaggtaatgttcggatgcctcctcgttgctgcctcttgctttctttctccaccatcttgccattccctctaatgcctttctcttcctccatatc |
34668465 |
T |
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| Q |
315 |
taatctaatctaatatatgtcttaaatctaacaatgctacacaccgatattgtctatgtatatatacacatcttgtactatgctaattagttata |
409 |
Q |
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| T |
34668466 |
taatctaatctaatatatgtcttaaatctaacaatgctacacaccgatattgtctatgtatatatacacatcttgtactatgctaattagttata |
34668560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Original strand, 34668682 - 34668712
Alignment:
| Q |
379 |
tacacatcttgtactatgctaattagttata |
409 |
Q |
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| T |
34668682 |
tacacatcttgtactatgctaattagttata |
34668712 |
T |
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