View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16506_high_1 (Length: 587)

Name: NF16506_high_1
Description: NF16506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16506_high_1
NF16506_high_1
[»] chr8 (7 HSPs)
chr8 (16-572)||(4578149-4578725)
chr8 (414-503)||(2627203-2627294)
chr8 (421-483)||(30857257-30857319)
chr8 (424-504)||(4578219-4578300)
chr8 (208-289)||(43122654-43122735)
chr8 (421-494)||(43447883-43447956)
chr8 (415-495)||(12381118-12381197)
[»] chr1 (10 HSPs)
chr1 (415-495)||(21945080-21945160)
chr1 (415-495)||(4604876-4604956)
chr1 (415-481)||(50692108-50692174)
chr1 (415-504)||(21945086-21945176)
chr1 (415-483)||(42074155-42074223)
chr1 (422-494)||(457612-457683)
chr1 (422-494)||(30412626-30412697)
chr1 (422-494)||(47911879-47911950)
chr1 (415-481)||(46673861-46673927)
chr1 (415-503)||(50692115-50692204)
[»] chr6 (9 HSPs)
chr6 (422-504)||(3633639-3633722)
chr6 (422-501)||(9605396-9605475)
chr6 (440-504)||(27159117-27159182)
chr6 (415-484)||(32650145-32650213)
chr6 (421-484)||(9210656-9210718)
chr6 (415-481)||(20703456-20703522)
chr6 (424-481)||(20703435-20703492)
chr6 (421-494)||(7055598-7055670)
chr6 (415-484)||(27159119-27159188)
[»] chr2 (3 HSPs)
chr2 (415-501)||(32082111-32082197)
chr2 (421-494)||(33853858-33853930)
chr2 (421-501)||(37287199-37287279)
[»] chr5 (10 HSPs)
chr5 (424-505)||(40773000-40773085)
chr5 (415-480)||(39231815-39231880)
chr5 (192-283)||(2039047-2039138)
chr5 (421-494)||(8850303-8850375)
chr5 (415-479)||(5354771-5354835)
chr5 (424-481)||(6266188-6266247)
chr5 (421-479)||(5354803-5354861)
chr5 (415-494)||(17768049-17768125)
chr5 (421-494)||(19087817-19087889)
chr5 (415-495)||(39231831-39231911)
[»] chr3 (8 HSPs)
chr3 (457-504)||(9502900-9502948)
chr3 (422-479)||(27786510-27786567)
chr3 (415-503)||(27786478-27786567)
chr3 (415-494)||(33068231-33068310)
chr3 (415-481)||(33068214-33068280)
chr3 (424-481)||(29398510-29398566)
chr3 (415-476)||(36443929-36443990)
chr3 (415-503)||(38207447-38207535)
[»] chr4 (12 HSPs)
chr4 (421-503)||(32125366-32125449)
chr4 (421-504)||(51313495-51313578)
chr4 (449-495)||(51333496-51333542)
chr4 (424-480)||(24654183-24654239)
chr4 (421-501)||(32125370-32125450)
chr4 (421-481)||(52280895-52280955)
chr4 (424-494)||(2091388-2091457)
chr4 (422-472)||(11045676-11045726)
chr4 (422-472)||(11047524-11047574)
chr4 (422-480)||(29943695-29943753)
chr4 (419-484)||(36619619-36619684)
chr4 (439-484)||(47493250-47493295)
[»] chr7 (3 HSPs)
chr7 (415-505)||(24407194-24407285)
chr7 (422-494)||(35274452-35274523)
chr7 (421-494)||(12423685-12423757)


Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 16 - 572
Target Start/End: Complemental strand, 4578725 - 4578149
Alignment:
Q  16 atgggaaaggtggtggcgtgtgcgacggtgatcggagcaacggcggcgtgtgcagtggcgacggtgttgattcatcgttacgtgaagaaatcgaagcgat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4578725 atgggaaaggtggtggcgtgtgcgacggtgatcggagcaacggcggcgtgtgcagtggcgacggtgttgattcatcgttacgtgaagaaatcgaagcgat 4578626  T
Q  116 ggggtaaagcaatagcgatattgaaggaatttgaagagaagtgtgcgacaccaacgttgaagctgaaacaggttgctgatgcaatgacggtggagatgca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4578625 ggggtaaagcaatagcgatattgaaggaatttgaagagaagtgtgcgacaccaacgttgaagctgaaacaggttgctgatgcaatgacggtggagatgca 4578526  T
Q  216 cgctggtcttgcttctgatggtggtagtaagctcaaaatgcttatcagttttgttgataatcttcctacagggtataacttttttgatccaatcttaatc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4578525 cgctggtcttgcttctgatggtggtagtaagctcaaaatgcttatcagttttgttgataatcttcctacagggtataacttttttgatccaatcttaatc 4578426  T
Q  316 atgttgatctatagttttattagatcaatataaatttattaatttat--gtgttattatgacataatttcatccatatagccgatacgacatactccctc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4578425 atgttgatctatagttttattagatcaatataaatttattaatttatgtgtgttattatgacataatttcatccatatagccgataccacatactccctc 4578326  T
Q  414 c------------------aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa- 494  Q
    |                  |||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||     
T  4578325 ccgtcacatttataagcaaaaaaatcactttttaggttcattgaatacctaatgtatttcatatatattatagaccaaatacattaggtgttgaatgaac 4578226  T
Q  495 ctaaaaagtggnnnnnnnnngcttataaatgtgaccggtgggagtagtggtataagatttggctgttgttgttattat 572  Q
    ||||||| |||         |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  4578225 ctaaaaaatgg-ttttttttgcttataaatgtaactggtgggagtagtggtataagatttggctgttgttgttattat 4578149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 503
Target Start/End: Complemental strand, 2627294 - 2627203
Alignment:
Q  414 caaaaatta-ctttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagt 503  Q
    ||||||||| ||||||| ||||||| ||||  | |||||||| || |||||||| ||||||||||||||  | ||||||||| |||||||||    
T  2627294 caaaaattaactttttaagttcattcaataaatggtgtatttagtctatattattgaccaaatacattatttattgaatgaatctaaaaagt 2627203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 483
Target Start/End: Original strand, 30857257 - 30857319
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattagg 483  Q
    |||||||||| |||||||||||  || ||||||| |||||||||||| | |||||| ||||||    
T  30857257 tactttttagattcattgaatatttaatgtatttggtatatattatacatcaaatatattagg 30857319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 504
Target Start/End: Original strand, 4578219 - 4578300
Alignment:
Q  424 tttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagtg 504  Q
    |||||||||||||| || ||||| ||||||| || |||| |||| |  ||||||||||||| || |||||| ||||||||||    
T  4578219 tttttaggttcattcaacacctaatgtatttggtctataatatatatgaaatacattaggtattcaatgaacctaaaaagtg 4578300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 43122654 - 43122735
Alignment:
Q  208 gagatgcacgctggtcttgcttctgatggtggtagtaagctcaaaatgcttatcagttttgttgataatcttcctacagggt 289  Q
    |||||||| ||||||||||| ||||| ||||| || ||||| |  ||| | ||||| | |||||||||||||||||| ||||    
T  43122654 gagatgcatgctggtcttgcatctgaaggtggcagcaagcttagcatgttaatcagctatgttgataatcttcctactgggt 43122735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 43447956 - 43447883
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    |||||||||| |||||||||||| || |||| ||  |||||||||||||| ||||| |||| || || ||||||    
T  43447956 tactttttagattcattgaatacataatgtacttgatatatattatagactaaataaattaagtatttaatgaa 43447883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 495
Target Start/End: Complemental strand, 12381197 - 12381118
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaac 495  Q
    ||||| |||||||||| |||||||||||   | ||||||| || | ||| |||||||||||||||||| | ||||||||||    
T  12381197 aaaaaatactttttagattcattgaatataaaatgtatttagtctgtat-atagaccaaatacattagatattgaatgaac 12381118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 415 - 495
Target Start/End: Original strand, 21945080 - 21945160
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaac 495  Q
    |||||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21945080 aaaaatcactttttagattcattgaatacctaatgtatttggtatatattatagaccaaatacattaggtgttgaatgaac 21945160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 415 - 495
Target Start/End: Complemental strand, 4604956 - 4604876
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaac 495  Q
    |||||| |||||||||||| |||||||||||| ||||||| |||||||||||| |||||||||||||   |||||||||||    
T  4604956 aaaaatcactttttaggtttattgaatacctaatgtatttggtatatattataaaccaaatacattaatagttgaatgaac 4604876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 50692108 - 50692174
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacatta 481  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||    
T  50692108 aaaaactactttttaggttcattaaatacctaatgtatttggtatatattatagatcaaatacatta 50692174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 415 - 504
Target Start/End: Complemental strand, 21945176 - 21945086
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagtg 504  Q
    ||||| || |||||||||||||| || ||||| ||||||| || |||| |||| |||||||||||||||| || |||||| ||||||||||    
T  21945176 aaaaactattttttaggttcattcaacacctaatgtatttggtctataatatataccaaatacattaggtattcaatgaatctaaaaagtg 21945086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 483
Target Start/End: Original strand, 42074155 - 42074223
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattagg 483  Q
    |||||||||||||||  ||||||| |||| || ||||||| |||||||| |||||||||||| ||||||    
T  42074155 aaaaattactttttaaattcattggatacttaatgtatttggtatatataatagaccaaatatattagg 42074223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 494
Target Start/End: Complemental strand, 457683 - 457612
Alignment:
Q  422 actttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    |||||||||||||||||||||| || ||||||| || |||| ||| ||||||||||||||  | |||||||||    
T  457683 actttttaggttcattgaatacataatgtatttggtctata-tattgaccaaatacattaaatattgaatgaa 457612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 494
Target Start/End: Original strand, 30412626 - 30412697
Alignment:
Q  422 actttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    |||||||||||||||||||||| || ||||||| || |||| ||| ||||||||||||||  | |||||||||    
T  30412626 actttttaggttcattgaatacataatgtatttggtctata-tattgaccaaatacattaaatattgaatgaa 30412697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 494
Target Start/End: Original strand, 47911879 - 47911950
Alignment:
Q  422 actttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    |||||||||||||||||||||| || ||||||| || |||| ||| ||||||||||||||  | |||||||||    
T  47911879 actttttaggttcattgaatacataatgtatttggtctata-tattgaccaaatacattaaatattgaatgaa 47911950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 46673861 - 46673927
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacatta 481  Q
    ||||| |||||||||| ||||||||||| ||| | ||||| || || |||||||| |||||||||||    
T  46673861 aaaaactactttttagattcattgaatatctaatatatttggtctagattatagatcaaatacatta 46673927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 503
Target Start/End: Complemental strand, 50692204 - 50692115
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagt 503  Q
    ||||| |||||||||| ||| | |||||| || |||||||  | |||| |||| |||||||||||||||| || |||||| |||||||||    
T  50692204 aaaaactactttttagattcttagaatacgtaatgtatttgatctataatatataccaaatacattaggtatttaatgaacctaaaaagt 50692115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 422 - 504
Target Start/End: Original strand, 3633639 - 3633722
Alignment:
Q  422 actttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagtg 504  Q
    ||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  3633639 actttttaggttcattgcatagctaatgtatttggtatatattatagaccaaatatattaggtgtttaatgaatctaaaaagtg 3633722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 422 - 501
Target Start/End: Original strand, 9605396 - 9605475
Alignment:
Q  422 actttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaactaaaaa 501  Q
    ||||||||  || ||||||||| || |||||||  ||||||||||||||||||||||||||||||||| |||||| ||||    
T  9605396 actttttaatttaattgaatacttaatgtatttgatatatattatagaccaaatacattaggtgttgagtgaacttaaaa 9605475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 504
Target Start/End: Original strand, 27159117 - 27159182
Alignment:
Q  440 atacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagtg 504  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  27159117 atacctaatgtatttgatatatattatagatcaaatacattaggtgttgaatgaacctaaaaagtg 27159182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 484
Target Start/End: Complemental strand, 32650213 - 32650145
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggt 484  Q
    |||||||| |||||||||| |||||||||||| ||||||| ||||||| ||||||| ||||| |||||||    
T  32650213 aaaaattaatttttaggttgattgaataccta-tgtatttggtatataatatagactaaatatattaggt 32650145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 484
Target Start/End: Original strand, 9210656 - 9210718
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggt 484  Q
    ||||||||| |||||||||| || || | ||||| |||||||||||||||||||||||||||||    
T  9210656 tactttttaagttcattgaa-acataatttatttggtatatattatagaccaaatacattaggt 9210718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 481
Target Start/End: Complemental strand, 20703522 - 20703456
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacatta 481  Q
    |||| |||| |||| |||||||||||||  || ||||||| || |||||||||||||||||||||||    
T  20703522 aaaatttacatttttggttcattgaatatttaatgtatttggtctatattatagaccaaatacatta 20703456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 424 - 481
Target Start/End: Original strand, 20703435 - 20703492
Alignment:
Q  424 tttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacatta 481  Q
    |||||||||||||||||||  || ||||||| || |||| ||||||||||||||||||    
T  20703435 tttttaggttcattgaatatttaatgtatttggtctataatatagaccaaatacatta 20703492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 7055670 - 7055598
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    ||||||||||||||||||||||| || | |||||  | |||| ||| |||||||||||||| || |||||||||    
T  7055670 tactttttaggttcattgaatacataatatatttgatctata-tattgaccaaatacattaagtattgaatgaa 7055598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 484
Target Start/End: Complemental strand, 27159188 - 27159119
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggt 484  Q
    |||||| |||||||||||||||| || ||||| |||||||  | |||| |||| | ||||||||||||||    
T  27159188 aaaaatcactttttaggttcattcaacacctaatgtatttgatctataatatatatcaaatacattaggt 27159119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 501
Target Start/End: Original strand, 32082111 - 32082197
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaactaaaaa 501  Q
    |||||||||||||||| |||||| |||||||| | ||||| ||||||||||||||||||||| ||||| |||||||| |||| ||||    
T  32082111 aaaaattactttttagattcattcaatacctaatatatttggtatatattatagaccaaatatattagatgttgaataaacttaaaa 32082197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 421 - 494
Target Start/End: Original strand, 33853858 - 33853930
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    ||||||||||||||||||||||| || ||||||| || |||| ||| ||||||||| |||| || |||||||||    
T  33853858 tactttttaggttcattgaatacataatgtatttggtttata-tattgaccaaataaattaagtattgaatgaa 33853930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 501
Target Start/End: Original strand, 37287199 - 37287279
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaactaaaaa 501  Q
    ||||||| ||||||||||||||| || |||||||  ||||| ||||| |||||||| ||| | | || |||||||| ||||    
T  37287199 tacttttaaggttcattgaatacataatgtatttaatatattttataaaccaaatatatttgatatttaatgaacttaaaa 37287279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 424 - 505
Target Start/End: Original strand, 40773000 - 40773085
Alignment:
Q  424 tttttaggttcattgaatacctagtgtatt---tcgtatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagtgg 505  Q
    |||||||||||||| ||||| || ||||||   | ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40773000 tttttaggttcatttaatacttaatgtattatttggtatatattatagaccaaatacattaggtgttgaatgaacctaaaaagtgg 40773085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 415 - 480
Target Start/End: Original strand, 39231815 - 39231880
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacatt 480  Q
    ||||||||||||| ||||||||||||||| || ||||||| |||||||||||| ||||||||||||    
T  39231815 aaaaattacttttaaggttcattgaatacgtaatgtatttggtatatattataaaccaaatacatt 39231880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 2039047 - 2039138
Alignment:
Q  192 tgatgcaatgacggtggagatgcacgctggtcttgcttctgatggtggtagtaagctcaaaatgcttatcagttttgttgataatcttccta 283  Q
    |||||| ||| |||||||||||||||||||| | |||||||| ||||||  |||||||||||||||| | |  | |||||||||||||||||    
T  2039047 tgatgctatggcggtggagatgcacgctggtttagcttctgaaggtggttctaagctcaaaatgcttcttacatatgttgataatcttccta 2039138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 8850375 - 8850303
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    ||||||||||||||||||||||| || ||||||| || |||| ||| ||||||||||||||  | |||||||||    
T  8850375 tactttttaggttcattgaatacataatgtatttggtctata-tattgaccaaatacattaaatattgaatgaa 8850303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 5354771 - 5354835
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacat 479  Q
    ||||| ||||||||||||||| ||||||||   ||||||| ||||||| ||||||| ||||||||    
T  5354771 aaaaactactttttaggttcaatgaataccacatgtatttggtatataatatagactaaatacat 5354835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 481
Target Start/End: Complemental strand, 6266247 - 6266188
Alignment:
Q  424 tttttaggttcattgaatacctagtgtatttcgtatata--ttatagaccaaatacatta 481  Q
    |||||||||| ||||||||| || ||||||| |||||||  |||||||||||||||||||    
T  6266247 tttttaggtttattgaatacttaatgtatttggtatatacattatagaccaaatacatta 6266188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 479
Target Start/End: Complemental strand, 5354861 - 5354803
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacat 479  Q
    |||||||||||| |||||||||| |  ||||||| || ||||||||| |||||||||||    
T  5354861 tactttttaggtccattgaatactttatgtatttagtctatattatataccaaatacat 5354803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 494
Target Start/End: Complemental strand, 17768125 - 17768049
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    |||||||| |||||||||||||||||||| || ||||||| || ||   |||| |||||||||||||  | |||||||||    
T  17768125 aaaaattattttttaggttcattgaatacataatgtatttggtcta---tatataccaaatacattaaatattgaatgaa 17768049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 19087889 - 19087817
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    ||||||||||||||||||||||| || ||||||| || |||| ||| || ||||||||||| || || ||||||    
T  19087889 tactttttaggttcattgaatacataatgtatttggtctata-tattgaacaaatacattaagtattcaatgaa 19087817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 495
Target Start/End: Complemental strand, 39231911 - 39231831
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaac 495  Q
    ||||| || |||||||||||||| |||| | | ||||||| || |||| |||| ||||||||||||| || || |||||||    
T  39231911 aaaaactattttttaggttcatttaatatcaaatgtatttggtttataatatataccaaatacattacgtattcaatgaac 39231831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 457 - 504
Target Start/End: Complemental strand, 9502948 - 9502900
Alignment:
Q  457 tatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagtg 504  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9502948 tatatattatagaccaaatacattaggtgttgaatgaatctaaaaagtg 9502900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 27786567 - 27786510
Alignment:
Q  422 actttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacat 479  Q
    ||||||||||||||||||||||||| | ||||| || ||||||||| |||||||||||    
T  27786567 actttttaggttcattgaatacctaatatatttggtctatattatacaccaaatacat 27786510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 503
Target Start/End: Original strand, 27786478 - 27786567
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagt 503  Q
    ||||| |||||||||||||||  |||||||   ||||||| || |||| ||||||||||||| ||||||| || |||||| |||||||||    
T  27786478 aaaaactactttttaggttcacggaataccctatgtatttggtgtataatatagaccaaatatattaggtattcaatgaacctaaaaagt 27786567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 494
Target Start/End: Complemental strand, 33068310 - 33068231
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    |||||||| ||||||  |||||||||||  || | ||||| || ||||||||||||||||||||||| || || ||||||    
T  33068310 aaaaattattttttacattcattgaatatttaatatatttggtctatattatagaccaaatacattatgtattcaatgaa 33068231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 33068214 - 33068280
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacatta 481  Q
    |||||||| ||||||  |||||||||||| || ||||||| || |||| ||||||||||||| ||||    
T  33068214 aaaaattattttttatattcattgaatacataatgtatttggtctataatatagaccaaatatatta 33068280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 481
Target Start/End: Complemental strand, 29398566 - 29398510
Alignment:
Q  424 tttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacatta 481  Q
    |||||||||||||||||||| || ||||||| || |||| ||||||| ||||||||||    
T  29398566 tttttaggttcattgaatacataatgtatttggtttata-tatagactaaatacatta 29398510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 476
Target Start/End: Complemental strand, 36443990 - 36443929
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaata 476  Q
    |||||||  |||||||||||||||||||||||  ||||||  | |||| |||||||||||||    
T  36443990 aaaaatttatttttaggttcattgaatacctaacgtatttgatttataatatagaccaaata 36443929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 503
Target Start/End: Original strand, 38207447 - 38207535
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagt 503  Q
    ||||| |||||||||  ||| |||||||  || |||||||  |||||||  |||||||||||||||||| |||||||||| |||||||||    
T  38207447 aaaaaatactttttacattcgttgaatatataatgtatttgatatatatg-tagaccaaatacattaggggttgaatgaatctaaaaagt 38207535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 503
Target Start/End: Original strand, 32125366 - 32125449
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagt 503  Q
    |||||||| |||||||||||||| || |||| || ||||||||||||||||| ||||||||| | || |||||| |||||||||    
T  32125366 tacttttttggttcattgaatacttaatgtacttggtatatattatagaccacatacattagatattcaatgaacctaaaaagt 32125449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 504
Target Start/End: Original strand, 51313495 - 51313578
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa-ctaaaaagtg 504  Q
    |||||||||| |||||||||||| || ||||||| || |||| ||| |||||||||||||| || ||||||||| ||||||||||    
T  51313495 tactttttagcttcattgaatacataatgtatttagtctata-tattgaccaaatacattaagtattgaatgaatctaaaaagtg 51313578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 495
Target Start/End: Original strand, 51333496 - 51333542
Alignment:
Q  449 gtatttcgtatatattatagaccaaatacattaggtgttgaatgaac 495  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  51333496 gtatttagtatatattatagaccaaatatattagatgttgaatgaac 51333542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 480
Target Start/End: Original strand, 24654183 - 24654239
Alignment:
Q  424 tttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacatt 480  Q
    |||||||||||| ||||| | || ||||||| ||||||||||| |||||||||||||    
T  24654183 tttttaggttcactgaatgcataatgtatttggtatatattattgaccaaatacatt 24654239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 501
Target Start/End: Complemental strand, 32125450 - 32125370
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaactaaaaa 501  Q
    |||||||||||||||||||||| ||| ||||| | || |||| |||| ||||| ||||||| || || ||||||| |||||    
T  32125450 tactttttaggttcattgaatatctaatgtatgtggtctataatatataccaagtacattaagtattcaatgaaccaaaaa 32125370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 481
Target Start/End: Original strand, 52280895 - 52280955
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacatta 481  Q
    ||||||||||||||||||||||| || || ||||  ||| ||| |||||||||||||||||    
T  52280895 tactttttaggttcattgaatacttaatgaatttgatatgtatcatagaccaaatacatta 52280955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 494
Target Start/End: Complemental strand, 2091457 - 2091388
Alignment:
Q  424 tttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    |||||||||| ||||||||| || ||||||| || ||| |||| |||||||||||||| || |||||||||    
T  2091457 tttttaggttaattgaatacataatgtatttggtctat-ttattgaccaaatacattaagtattgaatgaa 2091388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 11045676 - 11045726
Alignment:
Q  422 actttttaggttcattgaatacctagtgtatttcgtatatattatagacca 472  Q
    ||||||||||||||||||||| ||| | ||||| || ||||||||||||||    
T  11045676 actttttaggttcattgaataactaatatatttagtctatattatagacca 11045726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 11047524 - 11047574
Alignment:
Q  422 actttttaggttcattgaatacctagtgtatttcgtatatattatagacca 472  Q
    ||||||||||||||||||||| ||| | ||||| || ||||||||||||||    
T  11047524 actttttaggttcattgaataactaatatatttagtctatattatagacca 11047574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 29943753 - 29943695
Alignment:
Q  422 actttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacatt 480  Q
    ||||||||  ||| ||||| | ||| ||||||| |||||||||||||||||||||||||    
T  29943753 actttttaaattcgttgaaaatctaatgtatttggtatatattatagaccaaatacatt 29943695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 36619684 - 36619619
Alignment:
Q  419 attactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggt 484  Q
    |||||||||||| |||||| |||| | | | ||||| |||||||||||| |||||||| |||||||    
T  36619684 attactttttagattcattaaatatcaaatatatttggtatatattatacaccaaatatattaggt 36619619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 47493295 - 47493250
Alignment:
Q  439 aatacctagtgtatttcgtatatattatagaccaaatacattaggt 484  Q
    |||||||| ||| ||| |||||| ||||||||||||||||||||||    
T  47493295 aatacctaatgtgtttagtatatgttatagaccaaatacattaggt 47493250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 24407285 - 24407194
Alignment:
Q  415 aaaaattactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaac-taaaaagtgg 505  Q
    |||||| | ||||||| ||||||||| ||||| |||||||  ||| |||||||||| | |||||||| ||||||||||| | ||||||||||    
T  24407285 aaaaatcaatttttagattcattgaacacctaatgtatttaatatgtattatagacaatatacattatgtgttgaatgatcataaaaagtgg 24407194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 494
Target Start/End: Complemental strand, 35274523 - 35274452
Alignment:
Q  422 actttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    |||||||||||||||||||||| || ||||||| || |||| ||| ||||||||||||||  | |||||||||    
T  35274523 actttttaggttcattgaatacataatgtatttggtctata-tattgaccaaatacattaaatattgaatgaa 35274452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 12423757 - 12423685
Alignment:
Q  421 tactttttaggttcattgaatacctagtgtatttcgtatatattatagaccaaatacattaggtgttgaatgaa 494  Q
    ||||||||||||||||||||||| || |||||||    |||| |||||||||||||| |||| | |||||||||    
T  12423757 tactttttaggttcattgaatacataatgtatttgacctata-tatagaccaaatacgttagatattgaatgaa 12423685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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