View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16506_high_2 (Length: 556)
Name: NF16506_high_2
Description: NF16506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16506_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 549
Target Start/End: Original strand, 24827828 - 24828359
Alignment:
| Q |
18 |
aaatttgcatagaaattggacaggaccaccttgtatagaaaacaaccttagtatatggtttggtatcacttgttcaaattggcatgttgttcatattaca |
117 |
Q |
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| T |
24827828 |
aaatttgcatagaaattggacaggaccaccttgtatagaaaacaaccttagtatatggtttggaatcgcttgttcaaattggcatgttgttcatattaca |
24827927 |
T |
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| Q |
118 |
attcaaggagtcaaccttagtggctatttaccttcaacatttcttcaaaacataactttcttgaggcaaattgatttcagaaacaatgcactttttggat |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24827928 |
attcaaggagtcaacctcagtggctatttaccttcaacatttcttcaaaacataactttcttgaggcaaattgatttcagaaacaatgcactttttggat |
24828027 |
T |
|
| Q |
218 |
tattgccaaatcttacaggtttggttttcttagaagaagttaagctttcttttaatcatttctcaggttcaattcctttggaatatgttgaattgcataa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24828028 |
tattgccaaatcttacaggtttggttttcttagaagaagttaagctttcttttaatcatttctcaggttcaattcctttggaatatgttgaattgtataa |
24828127 |
T |
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| Q |
318 |
tctagagattttggagttgcaagaaaattatttggatggtgaaattccaccttttgatcaaccatcattgataagtttcaatgtgtcatataatcatttg |
417 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24828128 |
tctagatattttggagttgcaagaaaattatttggatggtgaaattccaccttttgatcaaccatcattgataagtttcaatgtgtcatataatcatttg |
24828227 |
T |
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| Q |
418 |
gtagggaaaattcctgaaacttctttgcttcaaaggtttccaaagagttcttttgatgataattctgatctttgtggaaaaccattggataagtcatgtt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24828228 |
gtagggaaaattcctgaaacttctttgcttcaaaggtttccaaagagttcttttgatgataattctgatctttgtggaaaaccattggataagtcatgtt |
24828327 |
T |
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| Q |
518 |
ctgctgaatctcctgcaccacttccctttgct |
549 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
24828328 |
ctgctgaatctcctgcaccacttccttttgct |
24828359 |
T |
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