View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16506_high_5 (Length: 265)
Name: NF16506_high_5
Description: NF16506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16506_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 27343834 - 27343963
Alignment:
| Q |
13 |
aatatgagctttgtgggctttaaattaagcatcattgcaaagtggattcctttcaactcctttatccaactcggtgctcatcaataataatggggacgtt |
112 |
Q |
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| T |
27343834 |
aatatgagctttgtgggctttaaattaagcatcatcgcaa-gtggattcctttcaactcctttatccaactcggtgctcatc---aataatggggacgtt |
27343929 |
T |
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| Q |
113 |
tagtgataagagtcatatatgcatctctatcaaa |
146 |
Q |
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| T |
27343930 |
tagtgataagagtcatatatgcatctctatcaaa |
27343963 |
T |
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Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 26027178 - 26027274
Alignment:
| Q |
154 |
tagcatcaccttcctgcataa-cattaaagatgtttaatcagtgaacattttttagttcattcacacactccaattgctattagcttaccataaaag |
249 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26027178 |
tagcatcatcttcctgcataaacattaaagatgtttaatcagtgaacatttttcagtttattcacacactccaattgctattagcttaccataaaag |
26027274 |
T |
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