View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16506_low_3 (Length: 409)
Name: NF16506_low_3
Description: NF16506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16506_low_3 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 8213 - 8586
Alignment:
| Q |
17 |
catcatcttcacaacttcttctgcctgtttaaacaacaatttcataagaacttgttcaacactaaaaaacccggaaaatcataagggggttaaaaggaat |
116 |
Q |
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| T |
8213 |
catcatcttcacaacttcttctgcctgtttaaacaacaatttcataagaacttgttcaacactaaaaaacccggaaaatcataagggggttaaaaggaat |
8312 |
T |
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| Q |
117 |
aaataaccttgtttttgtgagaagatgggtcggtccccagcaccataataattcgaccatccttgtgagaagagataaccctttcactggtccagccctg |
216 |
Q |
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| T |
8313 |
aaataaccttgtttttgtgagaagatgggtcggtccccagcaccataataattcgaccatccttgtgagaagagataaccctttcactggtccagccctg |
8412 |
T |
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| Q |
217 |
cagaaaacagaatcaataataggaataagaagaaatgggcataggaatcaaataaaagagactcgaattgggaacttactctgaattggattccttgcat |
316 |
Q |
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| T |
8413 |
cagaaaacagaatcaataataggaataagaagaaatgggcataggaatcaaataaaagagactagaattgggaacttactctgaattggattccttgcat |
8512 |
T |
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| Q |
317 |
gtaacatttgtgaaattgtgtgtggtttttctcgtcatctacattgccaggactgaactcaacaccacaagtgg |
390 |
Q |
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| T |
8513 |
gtaacatttgtgaaattgtgtgtggtttttctcgtcatctacattgccgggagtgaactcaacaccacaagtgg |
8586 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 44148257 - 44148316
Alignment:
| Q |
17 |
catcatcttcacaacttcttctgcctgtttaaacaacaatttcataagaacttgttcaac |
76 |
Q |
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| T |
44148257 |
catcatcttcacaacttcttcaacctgtcataacaccaatttcataagaacttgttcaac |
44148316 |
T |
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